Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixed support for newer Gencode GTF versions #8351

Merged
merged 5 commits into from
Jun 28, 2023

removing commented statements

a7f9733
Select commit
Loading
Failed to load commit list.
Merged

Fixed support for newer Gencode GTF versions #8351

removing commented statements
a7f9733
Select commit
Loading
Failed to load commit list.
This check has been archived and is scheduled for deletion. Learn more about checks retention
Codecov / codecov/patch succeeded Jun 27, 2023 in 1s

89.286% of diff hit (target 86.302%)

View this Pull Request on Codecov

89.286% of diff hit (target 86.302%)

Annotations

Check warning on line 14 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L14

Added line #L14 was not covered by tests

Check warning on line 36 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L36

Added line #L36 was not covered by tests

Check warning on line 224 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L224

Added line #L224 was not covered by tests

Check warning on line 227 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L227

Added line #L227 was not covered by tests

Check warning on line 230 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L230

Added line #L230 was not covered by tests

Check warning on line 232 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L232

Added line #L232 was not covered by tests

Check warning on line 301 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L301

Added line #L301 was not covered by tests

Check warning on line 303 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L303

Added line #L303 was not covered by tests

Check warning on line 305 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L305

Added line #L305 was not covered by tests

Check warning on line 568 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L568

Added line #L568 was not covered by tests

Check warning on line 570 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L570

Added line #L570 was not covered by tests

Check warning on line 572 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L572

Added line #L572 was not covered by tests

Check warning on line 618 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L618

Added line #L618 was not covered by tests

Check warning on line 620 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L620

Added line #L620 was not covered by tests

Check warning on line 622 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L622

Added line #L622 was not covered by tests

Check warning on line 634 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L634

Added line #L634 was not covered by tests

Check warning on line 638 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L638

Added line #L638 was not covered by tests

Check warning on line 643 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L643

Added line #L643 was not covered by tests

Check warning on line 648 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L648

Added line #L648 was not covered by tests

Check warning on line 653 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L653

Added line #L653 was not covered by tests

Check warning on line 658 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L658

Added line #L658 was not covered by tests

Check warning on line 663 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L663

Added line #L663 was not covered by tests

Check warning on line 668 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L668

Added line #L668 was not covered by tests

Check warning on line 673 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L673

Added line #L673 was not covered by tests

Check warning on line 678 in src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/GencodeGTFFieldConstants.java#L678

Added line #L678 was not covered by tests