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Update import_gvs.py (#8617)
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danking authored Dec 12, 2023
1 parent 6c22481 commit f9d2342
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/extract/import_gvs.py
Original file line number Diff line number Diff line change
Expand Up @@ -298,7 +298,7 @@ def convert_array_with_id_keys_to_dense_array(arr, ids, drop=[]):
info(f'import_gvs: using target_records (records per partition) of {target_records} for VDS merge')

interval_tmp = os.path.join(tmp_dir, 'interval_checkpoint.ht')
target_final_intervals = calculate_new_intervals(first_ref_mt, target_records, interval_tmp)
target_final_intervals, _ = calculate_new_intervals(first_ref_mt, target_records, interval_tmp)

with hl._with_flags(no_whole_stage_codegen='1'):

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