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Stupid error that time.
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gbggrant committed Aug 26, 2024
1 parent 45f44fa commit d742d38
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions scripts/variantstore/wdl/GvsExtractCallset.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ version 1.0

import "GvsUtils.wdl" as Utils

# A comment??
# A comment?!?
workflow GvsExtractCallset {
input {
Expand Down Expand Up @@ -540,8 +540,6 @@ task CreateManifestAndOptionallyCopyOutputs {
OUTPUT_VCF_INDEX=${output_vcf_indices[$i]}
LOCAL_VCF_INDEX=$(basename $OUTPUT_VCF_INDEX)

echo ${interval_indices[$i]},${OUTPUT_FILE_DEST},${output_vcf_bytes[$i]},${OUTPUT_FILE_INDEX_DEST},${output_vcf_index_bytes[$i]}

if [ -n "${OUTPUT_GCS_DIR}" ]; then
gsutil cp $OUTPUT_VCF ${OUTPUT_GCS_DIR}/
gsutil cp $OUTPUT_VCF_INDEX ${OUTPUT_GCS_DIR}/
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