Don't forget the override jar in GvsJointVariantCalling.wdl

broadinstitute · Jun 28, 2023 · c92dbdd · c92dbdd
1 parent a778e4c
commit c92dbdd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/variantstore/wdl/GvsJointVariantCalling.wdl b/scripts/variantstore/wdl/GvsJointVariantCalling.wdl
@@ -39,7 +39,7 @@ workflow GvsJointVariantCalling {
       Int SNP_VQSR_CLASSIC_mem_gb_override = ""
     }
     # This is the most updated snapshot of the code as of June 22, 2023
-    File gatk_override = "gs://gvs_quickstart_storage/jars/gatk-package-4.2.0.0-726-g63a0bea-SNAPSHOT-local.jar"
+    File gatk_override = "gs://gvs_quickstart_storage/jars/gatk-package-4.2.0.0-721-ga778e4c-SNAPSHOT-local.jar"
     File interval_list = "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list"
 
     File interval_weights_bed = "gs://broad-public-datasets/gvs/weights/gvs_vet_weights_1kb.bed"