pip

broadinstitute · Dec 9, 2023 · 4a4b5c6 · 4a4b5c6
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diff --git a/scripts/docker/gatkbase/Dockerfile b/scripts/docker/gatkbase/Dockerfile
@@ -7,6 +7,7 @@ RUN apt update && \
     apt full-upgrade -y && \
     apt install -y --no-install-recommends \
     python3 \
+    python3-pip \
     wget \
     curl \
     bc \

diff --git a/scripts/gatkcondaenv.yml.template b/scripts/gatkcondaenv.yml.template
@@ -20,7 +20,7 @@ dependencies:
 
 # core python dependencies
 - conda-forge::python=3.6.10        # do not update
-- pip=20.0.2                        # specifying channel may cause a warning to be emitted by conda
+- conda-forge::pip=20.0.2           # specifying channel may cause a warning to be emitted by conda
 - conda-forge::mkl=2019.5           # MKL typically provides dramatic performance increases for theano, tensorflow, and other key dependencies
 - conda-forge::mkl-service=2.3.0
 - conda-forge::joblib=1.1.1         # must pin joblib - versions after 1.1.1 no longer support python 3.6