update gCNV WDL tests

broadinstitute · Dec 13, 2023 · 2817487 · 2817487
1 parent 31a204b
commit 2817487
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Showing 6 changed files with 10 additions and 10 deletions.
diff --git a/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json b/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json
@@ -17,8 +17,8 @@
   "CNVGermlineCaseScatteredWorkflow.gcnv_max_training_epochs": 1,
   "CNVGermlineCaseScatteredWorkflow.gcnv_min_training_epochs": 1,
   "CNVGermlineCaseScatteredWorkflow.gcnv_model_tars": [
-    "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz",
-    "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz"],
+    "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz",
+    "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz"],
   "CNVGermlineCaseScatteredWorkflow.gcnv_num_thermal_advi_iters": 1,
   "CNVGermlineCaseScatteredWorkflow.intervals": "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/ice_targets_chr20xy.interval_list",
   "CNVGermlineCaseScatteredWorkflow.filtered_intervals": "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/ice_targets_chr20xy.preprocessed.filtered.interval_list",

diff --git a/...st/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz b/...st/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz
diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz
diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz
diff --git a/...est/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz b/...est/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz
diff --git a/...est/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz b/...est/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz