Clean up .dockstore.yml Update to release docker tags.

broadinstitute · Jul 20, 2023 · 26fa502 · 26fa502
1 parent 4e40c14
commit 26fa502
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Showing 6 changed files with 9 additions and 14 deletions.
diff --git a/.dockstore.yml b/.dockstore.yml
@@ -88,7 +88,6 @@ workflows:
        branches:
          - master
          - ah_var_store
-         - gg_VS-1xxx_AddScoreToVQSRLiteVCF
    - name: GvsPopulateAltAllele
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsPopulateAltAllele.wdl
@@ -112,7 +111,6 @@ workflows:
        branches:
          - master
          - ah_var_store
-         - gg_VS-1xxx_AddScoreToVQSRLiteVCF
    - name: GvsImportGenomes
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsImportGenomes.wdl
@@ -216,15 +214,13 @@ workflows:
        branches:
          - master
          - ah_var_store
-         - gg_VS-1xxx_AddScoreToVQSRLiteVCF
    - name: GvsQuickstartHailIntegration
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsQuickstartHailIntegration.wdl
      filters:
        branches:
          - master
          - ah_var_store
-         - gg_VS-1xxx_AddScoreToVQSRLiteVCF
    - name: GvsQuickstartIntegration
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsQuickstartIntegration.wdl
@@ -233,7 +229,6 @@ workflows:
          - master
          - ah_var_store
          - vs_1001_bigquery_storage_to_v1
-         - gg_VS-1xxx_AddScoreToVQSRLiteVCF
    - name: GvsIngestTieout
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsIngestTieout.wdl

diff --git a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl
@@ -294,7 +294,7 @@ task ExtractFilterTask {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     memory: "7 GB"
     disks: "local-disk 10 HDD"
     bootDiskSizeGb: 15
@@ -356,7 +356,7 @@ task PopulateFilterSetSites {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     memory: "3500 MB"
     disks: "local-disk 200 HDD"
     bootDiskSizeGb: 15

diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl
@@ -354,7 +354,7 @@ task ExtractTask {
     echo ~{interval_index},${OUTPUT_FILE_DEST},${OUTPUT_FILE_BYTES},${OUTPUT_FILE_INDEX_DEST},${OUTPUT_FILE_INDEX_BYTES} >> manifest.txt
   >>>
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     memory: "12 GB"
     disks: "local-disk 150 HDD"
     bootDiskSizeGb: 15

diff --git a/scripts/variantstore/wdl/GvsImportGenomes.wdl b/scripts/variantstore/wdl/GvsImportGenomes.wdl
@@ -323,7 +323,7 @@ task LoadData {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     maxRetries: load_data_maxretries
     memory: "3.75 GB"
     disks: "local-disk 50 HDD"

diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl
@@ -41,7 +41,7 @@ task MergeVCFs {
   }
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     preemptible: select_first([preemptible_tries, 3])
     memory: "3 GiB"
     disks: "local-disk ~{disk_size} HDD"
@@ -127,7 +127,7 @@ task SplitIntervals {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     bootDiskSizeGb: 15
     memory: "~{disk_memory} GB"
     disks: "local-disk ~{disk_size} HDD"
@@ -934,7 +934,7 @@ task PopulateFilterSetInfo {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     memory: "3500 MB"
     disks: "local-disk 250 HDD"
     bootDiskSizeGb: 15

diff --git a/scripts/variantstore/wdl/GvsVQSRClassic.wdl b/scripts/variantstore/wdl/GvsVQSRClassic.wdl
@@ -362,7 +362,7 @@ task GatherTranches {
     bootDiskSizeGb: 15
     disks: "local-disk " + disk_size + " HDD"
     preemptible: 1
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
   }
 
   output {
@@ -565,7 +565,7 @@ task PopulateFilterSetTranches {
   >>>
 
   runtime {
-    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20_db62acf48732b8ac1c3a1557180102dd8f560c9a"
+    docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_20"
     memory: "3500 MB"
     disks: "local-disk 200 HDD"
     bootDiskSizeGb: 15