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cmnbroad committed Jun 27, 2023
1 parent 99ea4be commit 14a6bab
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions .github/workflows/gatk-tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -85,10 +85,10 @@ jobs:
SCALA_VERSION: ${{ matrix.scalaVersion }}
name: Java ${{ matrix.Java }} build and test ${{ matrix.testType }}
steps:
- uses: ./.github/actions/purge-runner-disk
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: 'Set up java ${{ matrix.Java }}'
uses: actions/setup-java@v3
with:
Expand Down Expand Up @@ -159,11 +159,12 @@ jobs:

name: Java ${{ matrix.Java }} test on docker ${{matrix.testType}}
steps:
- uses: ./.github/actions/purge-runner-disk
- uses: actions/checkout@v3
with:
fetch-depth: 0 #TODO make this shallow

- uses: ./.github/actions/purge-runner-disk

- name: 'Set up java ${{ matrix.Java }}'
uses: actions/setup-java@v3
with:
Expand Down Expand Up @@ -250,10 +251,10 @@ jobs:
runs-on: ubuntu-latest
name: Validate script WDLs using womtools
steps:
- uses: ./.github/actions/purge-runner-disk
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: Set up java 17
uses: actions/setup-java@v3
with:
Expand All @@ -271,10 +272,10 @@ jobs:
runs-on: ubuntu-latest
name: Validate generated WDLs using womtools
steps:
- uses: ./.github/actions/purge-runner-disk
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: Set up java 17
uses: actions/setup-java@v3
with:
Expand All @@ -297,10 +298,10 @@ jobs:
continue-on-error: true
name: WDL test ${{ matrix.wdlTest }} on cromwell
steps:
- uses: ./.github/actions/purge-runner-disk
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: pull lfs files
run: git lfs pull
- name: Set up java 17
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