-
Notifications
You must be signed in to change notification settings - Fork 589
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Update detector output files. (#8971)
Repair the CRAM detector/diagnostics test output to reflect the CRAM file name change that was introduced by updating the large CRAM files to v3.0.
- Loading branch information
Showing
4 changed files
with
75 additions
and
75 deletions.
There are no files selected for viewing
16 changes: 8 additions & 8 deletions
16
src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.false.bug8768.tsv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,11 @@ | ||
| file_name contig_name container_ordinal container_is_bad mismatch_rate alignment_start alignment_span | ||
| #No bad containers detected | ||
| #Good containers: | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 1 0 0.0066287128712871285 9999902 11055 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 2 0 0.0032158415841584157 10010859 11595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 3 0 0.0028702970297029705 10022353 10302 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 4 0 0.0028138613861386137 10032556 10955 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 1 0 0.007091089108910891 9999901 5725 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 2 0 0.008675247524752475 10005525 4771 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 3 0 0.006677227722772277 10010195 6694 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 4 0 0.006946534653465347 10016789 6937 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 1 0 0.0066287128712871285 9999902 11055 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 2 0 0.0032158415841584157 10010859 11595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 3 0 0.0028702970297029705 10022353 10302 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 4 0 0.0028138613861386137 10032556 10955 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 1 0 0.007091089108910891 9999901 5725 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 2 0 0.008675247524752475 10005525 4771 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 3 0 0.006677227722772277 10010195 6694 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 4 0 0.006946534653465347 10016789 6937 |
6 changes: 3 additions & 3 deletions
6
src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.false.bug8768.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
122 changes: 61 additions & 61 deletions
122
src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.true.bug8768.tsv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,64 +1,64 @@ | ||
| file_name contig_name container_ordinal container_is_bad mismatch_rate alignment_start alignment_span | ||
| #No bad containers detected | ||
| #Good containers: | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 1 0 0.0066287128712871285 9999902 11055 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 2 0 0.0032158415841584157 10010859 11595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 3 0 0.0028702970297029705 10022353 10302 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 4 0 0.0028138613861386137 10032556 10955 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 5 0 0.0026405940594059407 10043410 11007 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 6 0 0.0023297029702970297 10054316 11415 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 7 0 0.004123762376237624 10065630 11707 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 8 0 0.0029712871287128715 10077236 10857 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 9 0 0.004207920792079208 10087992 12022 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 10 0 0.004023762376237624 10099914 11455 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 11 0 0.0033594059405940594 10111269 11677 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 12 0 0.0032445544554455447 10122847 11517 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 13 0 0.0025287128712871286 10134264 10812 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 14 0 0.0028118811881188118 10144976 11737 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 15 0 0.0027811881188118813 10156616 11103 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 16 0 0.003216831683168317 10167620 10903 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 17 0 0.0033316831683168316 10178422 10654 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 18 0 0.0028544554455445545 10188975 12280 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 19 0 0.002307920792079208 10201162 10498 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 20 0 0.0033574257425742575 10211560 11415 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 21 0 0.002822772277227723 10222875 10825 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 22 0 0.003494059405940594 10233602 11012 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 20 23 0 0.003443653463400968 10244514 5587 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 1 0 0.007091089108910891 9999901 5725 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 2 0 0.008675247524752475 10005525 4771 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 3 0 0.006677227722772277 10010195 6694 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 4 0 0.006946534653465347 10016789 6937 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 5 0 0.0074524752475247525 10023629 6933 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 6 0 0.009954455445544555 10030464 54819 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 7 0 0.027154455445544554 10085182 1209 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 8 0 0.010437623762376237 10086291 1849 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 9 0 0.007101980198019802 10088040 4846 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 10 0 0.0076544554455445545 10092786 5025 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 11 0 0.007856435643564356 10097710 4565 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 12 0 0.008387128712871287 10102174 5112 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 13 0 0.008465346534653466 10107185 4822 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 14 0 0.006217821782178218 10111906 4648 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 15 0 0.006370297029702971 10116453 5595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 16 0 0.006818811881188119 10121948 4596 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 17 0 0.007886138613861386 10126444 4699 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 18 0 0.008905940594059405 10131043 4025 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 19 0 0.009242574257425742 10134967 3486 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 20 0 0.008777227722772278 10138352 2580 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 21 0 0.009877227722772277 10140831 2362 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 22 0 0.007791089108910891 10143092 3693 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 23 0 0.008422772277227722 10146684 3779 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 24 0 0.008382178217821782 10150362 3205 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 25 0 0.005921782178217822 10153467 4029 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 26 0 0.006862376237623763 10157395 3564 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 27 0 0.006395049504950495 10160858 3833 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 28 0 0.00555049504950495 10164591 4631 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 29 0 0.004498019801980198 10169122 5087 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 30 0 0.00440990099009901 10174110 5846 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 31 0 0.0058465346534653465 10179857 5196 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 32 0 0.005392079207920792 10184953 3979 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 33 0 0.005116831683168317 10188831 5765 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 34 0 0.005946534653465347 10194495 3216 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 35 0 0.0058 10197610 4759 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 36 0 0.00514950495049505 10202269 3867 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 37 0 0.004726732673267326 10206036 4706 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram 21 38 0 0.004119086417621911 10210641 5332 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 1 0 0.0066287128712871285 9999902 11055 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 2 0 0.0032158415841584157 10010859 11595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 3 0 0.0028702970297029705 10022353 10302 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 4 0 0.0028138613861386137 10032556 10955 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 5 0 0.0026405940594059407 10043410 11007 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 6 0 0.0023297029702970297 10054316 11415 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 7 0 0.004123762376237624 10065630 11707 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 8 0 0.0029712871287128715 10077236 10857 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 9 0 0.004207920792079208 10087992 12022 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 10 0 0.004023762376237624 10099914 11455 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 11 0 0.0033594059405940594 10111269 11677 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 12 0 0.0032445544554455447 10122847 11517 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 13 0 0.0025287128712871286 10134264 10812 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 14 0 0.0028118811881188118 10144976 11737 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 15 0 0.0027811881188118813 10156616 11103 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 16 0 0.003216831683168317 10167620 10903 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 17 0 0.0033316831683168316 10178422 10654 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 18 0 0.0028544554455445545 10188975 12280 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 19 0 0.002307920792079208 10201162 10498 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 20 0 0.0033574257425742575 10211560 11415 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 21 0 0.002822772277227723 10222875 10825 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 22 0 0.003494059405940594 10233602 11012 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 20 23 0 0.003443653463400968 10244514 5587 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 1 0 0.007091089108910891 9999901 5725 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 2 0 0.008675247524752475 10005525 4771 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 3 0 0.006677227722772277 10010195 6694 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 4 0 0.006946534653465347 10016789 6937 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 5 0 0.0074524752475247525 10023629 6933 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 6 0 0.009954455445544555 10030464 54819 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 7 0 0.027154455445544554 10085182 1209 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 8 0 0.010437623762376237 10086291 1849 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 9 0 0.007101980198019802 10088040 4846 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 10 0 0.0076544554455445545 10092786 5025 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 11 0 0.007856435643564356 10097710 4565 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 12 0 0.008387128712871287 10102174 5112 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 13 0 0.008465346534653466 10107185 4822 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 14 0 0.006217821782178218 10111906 4648 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 15 0 0.006370297029702971 10116453 5595 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 16 0 0.006818811881188119 10121948 4596 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 17 0 0.007886138613861386 10126444 4699 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 18 0 0.008905940594059405 10131043 4025 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 19 0 0.009242574257425742 10134967 3486 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 20 0 0.008777227722772278 10138352 2580 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 21 0 0.009877227722772277 10140831 2362 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 22 0 0.007791089108910891 10143092 3693 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 23 0 0.008422772277227722 10146684 3779 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 24 0 0.008382178217821782 10150362 3205 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 25 0 0.005921782178217822 10153467 4029 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 26 0 0.006862376237623763 10157395 3564 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 27 0 0.006395049504950495 10160858 3833 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 28 0 0.00555049504950495 10164591 4631 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 29 0 0.004498019801980198 10169122 5087 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 30 0 0.00440990099009901 10174110 5846 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 31 0 0.0058465346534653465 10179857 5196 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 32 0 0.005392079207920792 10184953 3979 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 33 0 0.005116831683168317 10188831 5765 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 34 0 0.005946534653465347 10194495 3216 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 35 0 0.0058 10197610 4759 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 36 0 0.00514950495049505 10202269 3867 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 37 0 0.004726732673267326 10206036 4706 | ||
| CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram 21 38 0 0.004119086417621911 10210641 5332 |
6 changes: 3 additions & 3 deletions
6
src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.true.bug8768.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters