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VS-1007 - Use default names for VQSR-Lite generated code. Build and Test GATK 4 #2751: Pull request #8412 opened by gbggrant
July 11, 2023 15:43 1h 17m 18s gg_VS-1007_UpdateVQSRLiteNaming
gg_VS-1007_UpdateVQSRLiteNaming
July 11, 2023 15:43 1h 17m 18s
ReblockGVCFs cleanup Build and Test GATK 4 #2750: Pull request #8411 opened by meganshand
July 11, 2023 15:00 1h 18m 8s ms_reblock
ms_reblock
July 11, 2023 15:00 1h 18m 8s
funcotator hg19 database 1.6 vs 1.7 - EGFR annotated with wrong ENST in 1.7 , but correct in 1.6 carrot-test-run-from-pr-comment #4190: Issue comment #8403 (comment) created by DanielAmsel
July 11, 2023 14:54 14s
July 11, 2023 14:54 14s
The VariantFiltration docs said that you can specify that it should remove the filtered variants, which does not seem to be accurate Build and Test GATK 4 #2749: Pull request #8410 opened by KevinCLydon
July 11, 2023 14:23 1h 37m 34s kl_inaccurate_variantfiltration_docs
kl_inaccurate_variantfiltration_docs
July 11, 2023 14:23 1h 37m 34s
Build and Upload GATK Nightly Docker Image Build and Upload GATK Nightly Docker Image #462: Scheduled
July 11, 2023 05:22 16m 24s master
master
July 11, 2023 05:22 16m 24s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2748: Pull request #8404 synchronize by mcovarr
July 10, 2023 22:12 1h 10m 40s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 22:12 1h 10m 40s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2747: Pull request #8404 synchronize by mcovarr
July 10, 2023 21:14 1h 20m 32s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 21:14 1h 20m 32s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2746: Pull request #8404 synchronize by mcovarr
July 10, 2023 19:55 1h 20m 4s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 19:55 1h 20m 4s
Build and Test GATK 4 Build and Test GATK 4 #2745: Manually run by meganshand
July 10, 2023 19:05 1h 18m 30s ms_g_length_annots
ms_g_length_annots
July 10, 2023 19:05 1h 18m 30s
Update the Intel GKL to the latest release, 0.8.11 carrot-test-run-from-pr-comment #4189: Issue comment #8409 (comment) created by droazen
July 10, 2023 18:57 12s
July 10, 2023 18:57 12s
Update the Intel GKL to the latest release, 0.8.11 Build and Test GATK 4 #2744: Pull request #8409 opened by droazen
July 10, 2023 18:56 1h 31m 3s dr_upgrade_gkl_to_0.8.11
dr_upgrade_gkl_to_0.8.11
July 10, 2023 18:56 1h 31m 3s
Changed ReadNameReadFilter to support mulitple readname inputs (#8405) Build and Test GATK 4 #2743: Commit a959ceb pushed by droazen
July 10, 2023 18:50 1h 28m 32s master
master
July 10, 2023 18:50 1h 28m 32s
Allow LocatableXsvFuncotationFactory to read gzipped files carrot-test-run-from-pr-comment #4188: Issue comment #8363 (comment) created by bbimber
July 10, 2023 18:49 13s
July 10, 2023 18:49 13s
Add support for breakend replacement alleles in SVCluster Build and Test GATK 4 #2742: Pull request #8408 opened by mwalker174
July 10, 2023 18:39 1h 19m 41s mw_collapse_bnd_alleles
mw_collapse_bnd_alleles
July 10, 2023 18:39 1h 19m 41s
Allow LocatableXsvFuncotationFactory to read gzipped files (#8363) Build and Test GATK 4 #2741: Commit 810326c pushed by droazen
July 10, 2023 18:26 1h 18m 32s master
master
July 10, 2023 18:26 1h 18m 32s
Update Beta User WDL to use bulk ingest [VS-982] carrot-test-run-from-pr-comment #4187: Issue comment #8379 (comment) created by rsasch
July 10, 2023 17:59 13s
July 10, 2023 17:59 13s
created variable for user to specify java heap size in picard in MT p… Build and Test GATK 4 #2740: Commit 66e35bb pushed by meganshand
July 10, 2023 17:06 1h 22m 29s master
master
July 10, 2023 17:06 1h 22m 29s
created variable for user to specify java heap size in picard Build and Test GATK 4 #2739: Pull request #8406 synchronize by dyeramosu
July 10, 2023 15:21 1h 15m 57s add-java-heap-variable
add-java-heap-variable
July 10, 2023 15:21 1h 15m 57s
Build and Test GATK 4 Build and Test GATK 4 #2738: Manually run by meganshand
July 10, 2023 15:20 1h 30m 49s ms_g_length_annots
ms_g_length_annots
July 10, 2023 15:20 1h 30m 49s
Update Beta User WDL to use bulk ingest [VS-982] carrot-test-run-from-pr-comment #4186: Issue comment #8379 (comment) created by mcovarr
July 10, 2023 12:00 13s
July 10, 2023 12:00 13s
Build and Upload GATK Nightly Docker Image Build and Upload GATK Nightly Docker Image #461: Scheduled
July 10, 2023 05:22 17m 5s master
master
July 10, 2023 05:22 17m 5s
Build and Upload GATK Nightly Docker Image Build and Upload GATK Nightly Docker Image #460: Scheduled
July 9, 2023 05:22 16m 23s master
master
July 9, 2023 05:22 16m 23s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2737: Pull request #8404 synchronize by mcovarr
July 8, 2023 18:01 1h 20m 46s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 8, 2023 18:01 1h 20m 46s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2736: Pull request #8404 synchronize by mcovarr
July 8, 2023 17:52 1h 6m 20s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 8, 2023 17:52 1h 6m 20s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2735: Pull request #8404 synchronize by mcovarr
July 8, 2023 17:47 1h 17m 8s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 8, 2023 17:47 1h 17m 8s