Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples #4504
Annotations
1 error and 1 warning
|
Build and push Docker image
buildx failed with: ERROR: failed to solve: process "/bin/sh -c ls . && rm /etc/apt/sources.list.d/google-cloud-sdk.list && apt update && apt-key list && curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key --keyring /usr/share/keyrings/cloud.google.gpg add - && add-apt-repository universe && apt update && apt-get --assume-yes install git-lfs && apt-get -y clean && apt-get -y autoclean && apt-get -y autoremove && rm -rf /var/lib/apt/lists/* && git lfs install --force && git lfs pull --include src/main/resources/large && export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE && cp -r $( find /gatk/build -name \"*bundle-files-collected\" )/ /gatk/unzippedJar/ && unzip -o -j $( find /gatk/unzippedJar -name \"gatkPython*.zip\" ) -d /gatk/unzippedJar/scripts && chmod -R a+rw /gatk/unzippedJar" did not complete successfully: exit code: 1
|
|
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, docker/metadata-action@v4, docker/setup-buildx-action@v2, docker/build-push-action@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
Loading