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Rewrite the SplitVariants task command in TasksGenotypeBatch.wdl to call svtk only once #618

Merged
merged 15 commits into from
Jan 5, 2024
Merged

Rewrite the SplitVariants task command in TasksGenotypeBatch.wdl to call svtk only once #618

merged 15 commits into from
Jan 5, 2024

Commits on Nov 13, 2023

  1. add python file for SplitVariants task

    @kirtanav98
    kirtanav98 committed Nov 13, 2023
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Commits on Nov 14, 2023

  1. edited TasksGenotype.wdl command to call SplitVariants.py

    @kirtanav98
    kirtanav98 committed Nov 14, 2023
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Commits on Nov 17, 2023

  1. changed command in TasksGenotypeBatch.wdl

    @kirtanav98
    kirtanav98 committed Nov 17, 2023
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Commits on Nov 20, 2023

  1. changed docker to include correct tag for sv-pipeline

    @kirtanav98
    kirtanav98 committed Nov 20, 2023
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  2. reformatted python script to match github lint8 formatting specificat… 

    …ions
    @kirtanav98
    kirtanav98 committed Nov 20, 2023
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  3. reformatted python script to match github lint8 formatting specificat… 

    …ions
    @kirtanav98
    kirtanav98 committed Nov 20, 2023
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Commits on Dec 18, 2023

  1. made changes based on first review

    @kirtanav98
    kirtanav98 committed Dec 18, 2023
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  2. made edit to python script to lint correctly

    @kirtanav98
    kirtanav98 committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. made edit to python script to lint correctly, and added extra clarify… 

    …ing comments to code.
    @kirtanav98
    kirtanav98 committed Dec 19, 2023
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  2. made edit to python script to lint correctly, and added extra clarify… 

    …ing comments to code.
    @kirtanav98
    kirtanav98 committed Dec 19, 2023
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Commits on Dec 20, 2023

  1. made edits based on second review.

    @kirtanav98
    kirtanav98 committed Dec 20, 2023
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  2. made edits based on second review.

    @kirtanav98
    kirtanav98 committed Dec 20, 2023
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  3. made edits based on second review.

    @kirtanav98
    kirtanav98 committed Dec 20, 2023
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Commits on Dec 22, 2023

  1. made edits based on second review.

    @kirtanav98
    kirtanav98 committed Dec 22, 2023
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Commits on Jan 5, 2024

  1. addressed changes in the last review

    @kirtanav98
    kirtanav98 committed Jan 5, 2024
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