Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Setup automatic updates to WDLs on Dockstore #605

Merged
merged 2 commits into from
Nov 16, 2023
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
163 changes: 163 additions & 0 deletions .github/.dockstore.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,163 @@
version: 1.2
workflows:
- subclass: WDL
name: GatherSampleEvidence
primaryDescriptorPath: /wdl/GatherSampleEvidence.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: EvidenceQC
primaryDescriptorPath: /wdl/EvidenceQC.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: TrainGCNV
primaryDescriptorPath: /wdl/TrainGCNV.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: GatherBatchEvidence
primaryDescriptorPath: /wdl/GatherBatchEvidence.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: ClusterBatch
primaryDescriptorPath: /wdl/ClusterBatch.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: GenerateBatchMetrics
primaryDescriptorPath: /wdl/GenerateBatchMetrics.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: FilterBatchSites
primaryDescriptorPath: /wdl/FilterBatchSites.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: PlotSVCountsPerSample
primaryDescriptorPath: /wdl/PlotSVCountsPerSample.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: FilterBatchSamples
primaryDescriptorPath: /wdl/FilterBatchSamples.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: MergeBatchSites
primaryDescriptorPath: /wdl/MergeBatchSites.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: GenotypeBatch
primaryDescriptorPath: /wdl/GenotypeBatch.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: RegenotypeCNVs
primaryDescriptorPath: /wdl/RegenotypeCNVs.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: CombineBatches
primaryDescriptorPath: /wdl/CombineBatches.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: ResolveComplexVariants
primaryDescriptorPath: /wdl/ResolveComplexVariants.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: GenotypeComplexVariants
primaryDescriptorPath: /wdl/GenotypeComplexVariants.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: CleanVcf
primaryDescriptorPath: /wdl/CleanVcf.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: MainVcfQc
primaryDescriptorPath: /wdl/MainVcfQc.wdl
filters:
branches:
- main
tags:
- /.*/

- subclass: WDL
name: AnnotateVcf
primaryDescriptorPath: /wdl/AnnotateVcf.wdl
filters:
branches:
- main
tags:
- /.*/