Kv remove ped followup (#565)

* Fixed readme to up-to-date version by removing three lines.

* Update README.md

Removed gCNV recommendation line

README.md

@@ -40,10 +40,6 @@ A structural variation discovery pipeline for Illumina short-read whole-genome s
   * [Cromwell](https://github.com/broadinstitute/cromwell) (v36 or higher). A dedicated server is highly recommended.
   * or [Terra](https://terra.bio/) (note preconfigured GATK-SV workflows are not yet available for this platform)
 * Recommended: [MELT](https://melt.igs.umaryland.edu/). Due to licensing restrictions, we cannot provide a public docker image or reference panel VCFs for this algorithm.
-* Recommended: [Manta](https://github.com/Illumina/manta). Calls SVs and indels from mapped PE reads based on split read and discordant read pair evidence.
-* Recommended: [Wham](https://github.com/zeeev/wham). Used to predict SV breakpoints after integrating all evidence.
-* Recommended: [cn.MOPS](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3351174/). Used to detect CNVs from variations in read depth using a mixture of Poisson models.
-* Recommended: [gatk-gCNV](https://gatk.broadinstitute.org/hc/en-us/articles/360035531152). Detects germline CNVs from variations in read depth.
 * Recommended: [cromshell](https://github.com/broadinstitute/cromshell) for interacting with a dedicated Cromwell server.
 * Recommended: [WOMtool](https://cromwell.readthedocs.io/en/stable/WOMtool/) for validating WDL/json files.