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Cleared python syntax issues
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kjaisingh committed Sep 26, 2024
1 parent 5040823 commit e819249
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/sv-pipeline/scripts/make_evidence_qc_table.py
Original file line number Diff line number Diff line change
Expand Up @@ -203,7 +203,7 @@ def merge_evidence_qc_table(
df_melt_insert_size = read_melt_insert_size(filename_melt_insert_size)

# all data frames
dfs = [df_ploidy, df_sex_assignments, df_bincov_median, df_wgd_scores, df_non_diploid,
dfs = [df_ploidy, df_sex_assignments, df_bincov_median, df_wgd_scores, df_non_diploid,
df_manta_high_outlier, df_melt_high_outlier, df_wham_high_outlier, df_total_high_outliers,
df_manta_low_outlier, df_melt_low_outlier, df_wham_low_outlier, df_total_low_outliers,
df_melt_insert_size]
Expand All @@ -223,7 +223,7 @@ def main():
parser.add_argument(
"-y", "--estimated-copy-number-filename",
help="Sets the filename containing estimated copy numbers per contig.")

parser.add_argument(
"-x", "--sex-assignments-filename",
help="Sets the filename containing copy number-based sex assignments.")
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