typhoonplots

Plots to visualize histones, transcription factors, and other DNA-binding proteins. Plot type created by the MacAlpine Lab, ported to Python by me.

Scripts:

• typhoonPlot.py Generates "typhoon plots" based off of one or more BAM/SAM files
• typhoonPlot_multiWindows.py Generates typhoon plots of a single BAM/SAM file across multiple windows
• kernelDensityPlot.py Generates kernel density plots off of one or more BAM/SAM files

Use run.py as a guide to run the three scripts in this repository.