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Update genotyphi to 2.1 #51040

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Update genotyphi to 2.1 #51040

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f5551c7
Update genotyphi to 2.1
BiocondaBot Sep 30, 2024
0222d46
clean up recipe
mencian Sep 30, 2024
88c41d7
clean up recipe
mencian Sep 30, 2024
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2 changes: 1 addition & 1 deletion recipes/genotyphi/build.sh
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/bash

mkdir -p $PREFIX/bin
cp genotyphi.py $PREFIX/bin/genotyphi.py
cp mappingbased/genotyphi.py $PREFIX/bin/genotyphi.py
ln $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi
chmod +x $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi

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12 changes: 7 additions & 5 deletions recipes/genotyphi/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{% set name="genotyphi" %}
{% set version = "2.0" %}
{% set sha256 = "ad1144fd94de00a3ece6abff08ae0d457760292747b87ddf3b64b2e5c83314ce" %}
{% set version = "2.1" %}
{% set sha256 = "bbb44b440b5fcfd792f633d7428e077a25b15a390d96af99748b178c8fa8c5b0" %}

package:
name: {{ name }}
Expand All @@ -12,15 +12,15 @@ source:

build:
noarch: python
number: 1
number: 0
run_exports:
- {{ pin_subpackage(name|lower, max_pin='x') }}

requirements:
host:
- wget
run:
- python <3
- python
- samtools >=1.1
- bcftools >=1.1
- pandas
Expand All @@ -33,6 +33,8 @@ test:

about:
home: https://github.com/typhoidgenomics/genotyphi
license: GPL3
license: GPL-3.0-or-later
license_family: GPL3
license_file: LICENSE
summary: Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
dev_url: https://github.com/typhoidgenomics/genotyphi
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