matrix_model_matlab

Prepping SeaFlow data and using it in the Hunter-Cevera 2-population matrix growth model. You must have Kristen Hunter-Cevera's phyto-division-rate-model downloaded and in your Matlab path.

Matlab files include:

• matrix_growth_rate_distributions.m
  • Grabs PAR from the SQLite database, smooths it, and samples it at 10-minute intervals to prep for the matrix model.
  • Grabs VCT data from the SeaFlow-OPP directory and bins the volumes and carbon quotas.
• PAR_2_matrix_growth.m
  • Grabs PAR from the ship's underway data for cruises when it seems the sfl file doesn't have it.
• matrix_growth_rate_driver.m
  • Based on KHC's call_to_opt_mvco.m
  • Imports the PAR and size distributions saved during matrix_growth_rate_distributions.m.
  • Runs the paramter optimization routine (in parallel) for each day and stores parameters and growth rates to modelresults. This is not yet exported because I have not yet had satisfactory convergence.