ApiCommonWorkflow

workflow step classes and workflow graphs in XML for the genomic sites

Dependencies

• yarn / npm / ant
• environment variables for GUS_HOME and PROJECT_HOME
• Internal Dependencies
  • ApiCommonData, ReFlow, GGTools, EbrcModelCommon

Installation instructions.

• bld ApiCommonWorkflow

Operating instructions.

• changes to workflow template files requires generateFromDatasets ExampleDatasets

Manifest

Main/bin

scripts to generate workflow files from dataset files for a provided component project.

Main/lib/perl

workflow step classes in Perl. These are reusable modules for any type of task.

Main/lib/xml

workflow graphs in XML. These graphs have steps that depend on each other and can also call subgraphs. Each step is a parameterized call to a step class.