FADH=0.06 mmol/gDW

change txt to tsv extension in anaerobic flux predictions
SysBioChalmers · Aug 26, 2024 · c0726a1 · c0726a1
1 parent d715f62
commit c0726a1
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/code/modelTests/anaerobic_flux_predictions.m b/code/modelTests/anaerobic_flux_predictions.m
@@ -1,6 +1,6 @@
 function R2=anaerobic_flux_predictions(model)
 
-fluxTable=  readtable('../../data/physiology/flux_data_anaerobic.txt');
+fluxTable=  readtable('../../data/physiology/flux_data_anaerobic.tsv');
 fluxTable = table2cell(fluxTable);
 vals_flux=fluxTable;
 text_flux=fluxTable;

diff --git a/code/otherChanges/anaerobicModel.m b/code/otherChanges/anaerobicModel.m
@@ -106,7 +106,7 @@
 % FAD[c]	FAD		bigg.metabolite/fad;chebi/CHEBI:57692;kegg.compound/C00016;metanetx.chemical/MNXM33;sbo/SBO:0000247	C27H30N9O15P2		c	s_0687	-3
 % FADH2[c]	FADH2		bigg.metabolite/fadh2;chebi/CHEBI:58307;kegg.compound/C01352;metanetx.chemical/MNXM38;sbo/SBO:0000247	C27H33N9O15P2		c	s_0689	-2
 %'FADH2[cytoplasm] + fumarate[cytoplasm]  ⇔ FAD[cytoplasm] + H+[cytoplasm] + succinate[cytoplasm] '
-FADH2_prod=0.08;
+FADH2_prod=0.06;
 %FAD charge -3 FADH2 -2
 % FADH2
 model.S(find(strcmp(model.mets,'s_0689')),strcmp(model.rxns,'r_4041'))=FADH2_prod;