chore: update citation #227
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: YAML validation | |
| on: | |
| push: | |
| branches: [develop] | |
| pull_request: | |
| branches: [main, develop] | |
| jobs: | |
| yaml-validation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: YAML Lint | |
| uses: ibiqlik/action-yamllint@v1 | |
| with: | |
| ## File(s) or Directory, separate by space if multiple files or folder are specified | |
| file_or_dir: model/ | |
| ## Custom configuration (as YAML source) | |
| config_data: "{extends: default, rules: {line-length: disable}}" | |
| ## Format for parsing output [parsable,standard,colored,auto] | |
| # format: # optional, default is colored | |
| ## Return non-zero exit code on warnings as well as errors | |
| # strict: # optional, default is false | |
| - name: Import with cobrapy | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| options: -v ${{ github.workspace }}:/opt | |
| shell: bash | |
| run: | | |
| cd /opt | |
| python -c "import cobra ; cobra.io.load_yaml_model('model/yeast-GEM.yml')" |