v4.6.1

What's Changed

• Update misaligned script by @thomasyu888 in #1144
• [SYNPY-1423] update mkdocstrings dependency for 1.8.0 by @danlu1 in #1145
• Add procps to Dockerfile to enable use of container in Nextflow by @adamjtaylor in #1146
• [SYNPY-1548] Swap to a FIFO queue by @BryanFauble in #1147

New Contributors

• @adamjtaylor made their first contribution in #1146

Full Changelog: v4.6.0...v4.6.1-rc

v4.6.1-rc

What's Changed

• Update misaligned script by @thomasyu888 in #1144
• [SYNPY-1423] update mkdocstrings dependency for 1.8.0 by @danlu1 in #1145
• Add procps to Dockerfile to enable use of container in Nextflow by @adamjtaylor in #1146
• [SYNPY-1548] Swap to a FIFO queue by @BryanFauble in #1147

New Contributors

• @adamjtaylor made their first contribution in #1146

Full Changelog: v4.6.0...v4.6.1-rc

v4.6.0

Highlights

• Patching an issue present in 4.5.1 that broke downloads from google bucket files.
• Support for python 3.12
• Drop support for python 3.8

What's Changed

• [SYNPY-1521] Fixes asDataFrame kwarg Collision Issue by @BWMac in #1132
• [SYNPY-1520] Support python 3.12 by @BryanFauble in #1133
• [SYNPY-1517] Deprecate Python 3.8 Support by @BWMac in #1134
• [SYNPY-1524] Fixes ghcr-build-and-push-on-develop and ghcr-build-and-push-on-release Workflows by @BWMac in #1136
• [SYNPY-1524] Updates Dockerfile by @BWMac in #1137
• [SYNPY-1525] Verify expiration param in url by @BryanFauble in #1139
• [SYNPY-1513] Validate input submission ID in getSubmission(...) by @jaymedina in #1135
• [SYNPY-1522] Add note on lost shared libraries to install instructions for conda by @jaymedina in #1140

Full Changelog: v4.5.1...v4.6.0-rc

v4.6.0-rc

Highlights

• Patching an issue present in 4.5.1 that broke downloads from google bucket files.
• Support for python 3.12
• Drop support for python 3.8

What's Changed

• [SYNPY-1521] Fixes asDataFrame kwarg Collision Issue by @BWMac in #1132
• [SYNPY-1520] Support python 3.12 by @BryanFauble in #1133
• [SYNPY-1517] Deprecate Python 3.8 Support by @BWMac in #1134
• [SYNPY-1524] Fixes ghcr-build-and-push-on-develop and ghcr-build-and-push-on-release Workflows by @BWMac in #1136
• [SYNPY-1524] Updates Dockerfile by @BWMac in #1137
• [SYNPY-1525] Verify expiration param in url by @BryanFauble in #1139
• [SYNPY-1513] Validate input submission ID in getSubmission(...) by @jaymedina in #1135
• [SYNPY-1522] Add note on lost shared libraries to install instructions for conda by @jaymedina in #1140

Full Changelog: v4.5.1...v4.6.0-rc

v4.5.1

4.5.1 (2024-09-19)

Highlights

• Telemetry auto instrumentation:
  • By employing the usage of the opentelemetry-python-contrib
    we are able to take advantage of the support for auto instrumenting several
    libraries in use by this client. This telemetry data is paramount for exceptional
    observability. Check out the readme for a quickstart.
• owner_id (Or the ID of the logged in profile) is available on logged in Synapse instance via syn.credentials.owner_id

What's Changed

• [FDS-2386] Add owner id to the credentials to be used later on by @BryanFauble in #1130
• [FDS-2386] Global client caching, Telemetry auto instruementation by @BryanFauble in #1129

Full Changelog: v4.5.0...v4.5.1-rc

v4.5.1-rc

4.5.1 (2024-09-19)

Highlights

• Telemetry auto instrumentation:
  • By employing the usage of the opentelemetry-python-contrib
    we are able to take advantage of the support for auto instrumenting several
    libraries in use by this client. This telemetry data is paramount for exceptional
    observability. Check out the readme for a quickstart.
• owner_id (Or the ID of the logged in profile) is available on logged in Synapse instance via syn.credentials.owner_id

What's Changed

• [FDS-2386] Add owner id to the credentials to be used later on by @BryanFauble in #1130
• [FDS-2386] Global client caching, Telemetry auto instruementation by @BryanFauble in #1129

Full Changelog: v4.5.0...v4.5.1-rc

v4.5.0

Highlights

• Improved handling of pre-authorized requests:
  • During long running asynchronous download operations (i.e. syncing a folder with many files),
    some pre-authorized URLs were expiring before they were used to download the file. This
    change will now check the expiration datetime of the URL before using it.
    If the URL is expired it will be refreshed.
• Added support for pandas.read_csv keyword arguments:
  • Added support for all pandas.read_csv keyword arguments to the asDataFrame method of the CsvFileTable class.
  • This enables custom handling of missing values and default values when reading a Synapse table to a pandas DataFrame. See the pandas documentation for a full list of available keyword arguments.

What's Changed

• [SYNPY-1514] Handle Expired Pre-Signed URLs by @BWMac in #1126
• [SYNPY-1509] Updates NA handling for CSVFileTable.asDataFrame by @BWMac in #1127
• [FDS-2373] Update retry delay, add some otel traces, add retry to url creation by @BryanFauble in #1128

Full Changelog: v4.4.1...v4.5.0

v4.5.0-rc

Highlights

• Improved handling of pre-authorized requests:
  • During long running asyncronous download operations (i.e. syncing a folder with many files),
    some pre-authorized URLs were expiring before they were used to download the file. This
    change will now check the expiration datetime of the URL before using it to download the file.
    If the URL is expired it will be refreshed.
• Added support for pandas.read_csv key word arguments:
  • Added support for all pandas.read_csv key word arguments to the asDataFrame method of the CsvFileTable class.
  • This enables custom handling of how to handle missing values and default values when reading a Synapse table to a pandas DataFrame.

What's Changed

• [SYNPY-1514] Handle Expired Pre-Signed URLs by @BWMac in #1126
• [SYNPY-1509] Updates NA handling for CSVFileTable.asDataFrame by @BWMac in #1127
• [FDS-2373] Update retry delay, add some otel traces, add retry to url creation by @BryanFauble in #1128

Full Changelog: v4.4.1...v4.5.0-rc

v4.4.1

What's Changed

• Update file tutorial with missing line by @rxu17 in #1123
• [SYNPY-1436] avoid duplicate user profile call during login by @danlu1 in #1124
• [SYNPY-1511] Correct missing synapse client propogation and caching by @BryanFauble in #1125

New Contributors

• @rxu17 made their first contribution in #1123

Full Changelog: v4.4.0...v4.4.1-rc

v4.4.1-rc

What's Changed

• Update file tutorial with missing line by @rxu17 in #1123
• [SYNPY-1436] avoid duplicate user profile call during login by @danlu1 in #1124
• [SYNPY-1511] Correct missing synapse client propogation and caching by @BryanFauble in #1125

New Contributors

• @rxu17 made their first contribution in #1123

Full Changelog: v4.4.0...v4.4.1-rc