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2.2.3

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@d-cameron d-cameron released this 16 May 05:40
· 879 commits to master since this release

Bug fix and QOL improvement release

  • Added friendly error message if specified BLACKLIST file does not exist
  • #199 AnnotateUntemplatedSequence no longer hangs if there are no records to annotate
  • #202 Added gridss program group header to GRIDSS generated BAMs
  • Added GRIDSS version number to VCF header
  • #213 Excluding local assembly anchoring from SC calculation so SC field can be used for variant linking purposes
  • Added ASC attribute
  • #205 fixed ASSEMBLY_ONLY filter reported for variants with indel support but not SR/RP support
  • Added error message when input and output VCFs are the same file
  • AnnotateUntemplatedSequence now only writes BEALN field if it does not already exist (useful for viral annotations)
  • Fixed some typos and descriptions
  • Added max clique telemetry. Enable by specifying a configuration file with visualisation.maxCliqueTelemetry = true.