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1. fastp fastp Public

   An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

   C++ 2k 335

2. MutScan MutScan Public

   Detect and visualize target mutations by scanning FastQ files directly

   C 149 38

3. GeneFuse GeneFuse Public

   Gene fusion detection and visualization

   C 118 63

4. gencore gencore Public

   Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

   C++ 116 31

5. repaq repaq Public

   A fast lossless FASTQ compressor with ultra-high compression ratio

   C 125 19

6. fastplong fastplong Public

   Ultra-fast preprocessing and quality control for long-read sequencing data

   C++ 89 4