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Repository for placing parameters and charges files (frcmod and mol2) of substrates used in our lab. All available files are distributed into folders depending on if they correspond to an enzyme, substrate or the combination of both from a docking simulation.

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MolBioMedUAB/AMBER_parameters

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AMBER_parameters

Repository for placing parameters and charges files (frcmod and mol2) of substrates used in our lab. All available files are distributed into folders depending on if they correspond to an enzyme, substrate or the combination of both from a docking simulation.

Available substrates:

  • DHA (docosahexeanoic acid)
  • 14S-HpDHA (14S-hidroperoxide-docosahexaenoic)
  • ACD (Arachidonic Acid)
  • OXY (Molecular oxygen)
  • EPA (Eicosapentaenoic acid)
  • MaR1 (Maresin-1)

Available enzymes:

  • human5LOX
  • human12LOX
  • human15LOX
  • humanCOX2 - monomer
  • humanCOX2 - homodimer

Available enzymes with a docked substrate

  • 14S-HpDHA/5LOX
  • DHA/human12LOX

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Repository for placing parameters and charges files (frcmod and mol2) of substrates used in our lab. All available files are distributed into folders depending on if they correspond to an enzyme, substrate or the combination of both from a docking simulation.

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