Feature inversion pipeline for modular iCNN construction #93
ci.yml
on: pull_request
lint
8s
type-check
2m 8s
Matrix: test
Annotations
33 errors and 10 warnings
lint
Process completed with exit code 1.
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test (3.10)
Process completed with exit code 1.
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test (3.11)
Process completed with exit code 1.
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test (3.8):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[0.824038, 0.374457, 0.424171, 0.795759, 0.027856, 0.550121,
0.203522, 0.588798, 0.584205, 0.522232],
[0.398979, 0.838282, 0.143207, 0.296664, 0.433012, 0.425797,...
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test (3.8):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.817494, 0.820784, 0.503222, 0.373678, 0.810321, 0.107679,
0.446157, 0.262372, 0.713632, 0.222238])
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test (3.8):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.450552, 0.377153, 0.736526, 0.938714, 0.835164, 0.624855,
0.343267, 0.567682, 0.726172, 0.873242],
[0.949025, 0.082061, 0.610741, 0.60682 , 0.245339, 0.006763,...
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test (3.8):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.8):
tests/bdata/test_bdata.py#L164
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
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test (3.8):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.8):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.9):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.9):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[0.699932, 0.975738, 0.043053, 0.544193, 0.64801 , 0.980918,
0.956833, 0.482126, 0.477926, 0.938224],
[0.48217 , 0.166477, 0.918838, 0.902962, 0.072411, 0.195202,...
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test (3.9):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.376763, 0.428747, 0.52128 , 0.425509, 0.692559, 0.53536 ,
0.867286, 0.371365, 0.917429, 0.359423])
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test (3.9):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.890992, 0.901751, 0.981578, 0.030826, 0.791532, 0.488164,
0.791113, 0.654065, 0.260052, 0.99834 ],
[0.319643, 0.862463, 0.960376, 0.193723, 0.533162, 0.965042,...
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test (3.9):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.9):
tests/bdata/test_bdata.py#L163
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
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test (3.9):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.9):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L4
Library stubs not installed for "PIL"
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib.pyplot": module is installed, but missing library stubs or py.typed marker
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib": module is installed, but missing library stubs or py.typed marker
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L6
Skipping analyzing "matplotlib.gridspec": module is installed, but missing library stubs or py.typed marker
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Error code: `import-untyped`:
bdpy/util/info.py#L13
Library stubs not installed for "yaml"
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Error code: `arg-type`:
bdpy/util/info.py#L24
Argument 1 to "md5" has incompatible type "str"; expected "Buffer"
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Error code: `var-annotated`:
bdpy/util/utils.py#L48
Need type annotation for "group_vector" (hint: "group_vector: List[<type>] = ...")
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Error code: `assignment`:
bdpy/util/utils.py#L64
Incompatible types in assignment (expression has type "ndarray[Any, dtype[Any]]", variable has type "List[Any]")
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Error code: `union-attr`:
bdpy/util/utils.py#L118
Item "List[Any]" of "Union[List[Any], ndarray[Any, Any]]" has no attribute "ndim"
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Error code: `call-overload`:
bdpy/util/utils.py#L119
No overload variant of "__getitem__" of "list" matches argument type "List[Any]"
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test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
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test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
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test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
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test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
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type-check:
bdpy/util/utils.py#L119
Possible overload variants:
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type-check:
bdpy/util/utils.py#L121
Possible overload variants:
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type-check:
bdpy/dataset/utils.py#L11
Hint: "python3 -m pip install types-tqdm"
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type-check:
bdpy/dataset/utils.py#L11
(or run "mypy --install-types" to install all missing stub packages)
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type-check:
bdpy/dataset/utils.py#L11
See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
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Error code: `annotation-unchecked`:
bdpy/dataform/features.py#L382
By default the bodies of untyped functions are not checked, consider using --check-untyped-defs
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