Merge branch 'dev' into ruff #72
ci.yml
on: push
lint
8s
type-check
2m 7s
Matrix: test
Annotations
33 errors and 10 warnings
lint
Process completed with exit code 1.
|
test (3.10)
Process completed with exit code 1.
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test (3.11)
Process completed with exit code 1.
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test (3.8):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
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test (3.8):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[0.649376, 0.265667, 0.69594 , 0.130841, 0.350791, 0.601293,
0.988577, 0.071022, 0.983739, 0.085796],
[0.952658, 0.661421, 0.554649, 0.374455, 0.938649, 0.464814,...
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test (3.8):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.01383 , 0.629368, 0.054157, 0.088197, 0.624333, 0.300257,
0.375427, 0.239287, 0.594651, 0.578749])
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test (3.8):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.978252, 0.815343, 0.715182, 0.892132, 0.4692 , 0.583503,
0.210463, 0.231392, 0.82408 , 0.236201],
[0.282879, 0.522247, 0.077234, 0.756388, 0.906791, 0.479369,...
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test (3.8):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.8):
tests/bdata/test_bdata.py#L164
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
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test (3.8):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
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test (3.8):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L4
Library stubs not installed for "PIL"
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib.pyplot": module is installed, but missing library stubs or py.typed marker
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Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib": module is installed, but missing library stubs or py.typed marker
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L6
Skipping analyzing "matplotlib.gridspec": module is installed, but missing library stubs or py.typed marker
|
Error code: `import-untyped`:
bdpy/util/info.py#L13
Library stubs not installed for "yaml"
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Error code: `arg-type`:
bdpy/util/info.py#L24
Argument 1 to "md5" has incompatible type "str"; expected "Buffer"
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Error code: `var-annotated`:
bdpy/util/utils.py#L48
Need type annotation for "group_vector" (hint: "group_vector: List[<type>] = ...")
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Error code: `assignment`:
bdpy/util/utils.py#L64
Incompatible types in assignment (expression has type "ndarray[Any, dtype[Any]]", variable has type "List[Any]")
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Error code: `union-attr`:
bdpy/util/utils.py#L118
Item "List[Any]" of "Union[List[Any], ndarray[Any, Any]]" has no attribute "ndim"
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Error code: `call-overload`:
bdpy/util/utils.py#L119
No overload variant of "__getitem__" of "list" matches argument type "List[Any]"
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test (3.9):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[1.262181e-02, 5.764180e-01, 1.257862e-01, 7.566924e-01,
7.982901e-01, 1.658114e-01, 2.160290e-01, 3.509436e-01,
4.424498e-04, 7.499394e-01],...
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test (3.9):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.624982, 0.211365, 0.300357, 0.72676 , 0.119952, 0.091536,
0.541732, 0.642813, 0.721037, 0.057317])
|
test (3.9):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.014954, 0.329343, 0.223366, 0.793825, 0.622305, 0.517982,
0.540887, 0.477174, 0.035943, 0.168282],
[0.424294, 0.544264, 0.256443, 0.065381, 0.449204, 0.30005 ,...
|
test (3.9):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.9):
tests/bdata/test_bdata.py#L163
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
|
test (3.9):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.9):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
|
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
|
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
|
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
|
type-check:
bdpy/util/utils.py#L119
Possible overload variants:
|
type-check:
bdpy/util/utils.py#L121
Possible overload variants:
|
type-check:
bdpy/dataset/utils.py#L11
Hint: "python3 -m pip install types-tqdm"
|
type-check:
bdpy/dataset/utils.py#L11
(or run "mypy --install-types" to install all missing stub packages)
|
type-check:
bdpy/dataset/utils.py#L11
See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
|
Error code: `annotation-unchecked`:
bdpy/dataform/features.py#L382
By default the bodies of untyped functions are not checked, consider using --check-untyped-defs
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