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Merge pull request #75 from KamitaniLab/async-features-get #44

Merge pull request #75 from KamitaniLab/async-features-get

Merge pull request #75 from KamitaniLab/async-features-get #44

Triggered via push November 14, 2023 09:35
Status Failure
Total duration 2m 14s
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ci.yml

on: push
Matrix: test
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33 errors and 8 warnings
lint
Process completed with exit code 1.
test (3.10)
Process completed with exit code 1.
test (3.11)
Process completed with exit code 1.
test (3.8): test/test_dataform_sparse.py#L70
TestUtil.test_load_array_jl FileNotFoundError: [Errno 2] Unable to synchronously open file (unable to open file: name = 'data/array_jl_dense_v1.mat', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)
test (3.8): test/test_dataform_sparse.py#L16
TestUtil.test_load_save_dense_array OSError: Unable to create or open file.
test (3.8): test/test_dataform_sparse.py#L42
TestUtil.test_load_save_sparse_array OSError: Unable to create or open file.
test (3.8): test/test_evals.py#L72
TestEval.test_2d FileNotFoundError: [Errno 2] No such file or directory: 'data/testdata-2d.pkl.gz'
test (3.8): test/test_evals.py#L88
TestEval.test_2d_nan FileNotFoundError: [Errno 2] No such file or directory: 'data/testdata-2d-nan.pkl.gz'
test (3.8): test/test_ml.py#L205
TestUtil.test_ModelTest_fastl2lir_chunk_bd_modelpath RuntimeError: W not found.
test (3.8): test/test_ml.py#L180
TestUtil.test_ModelTest_fastl2lir_chunk_pkl_modelpath ValueError: Invalid model path: ./test_models/fastl2lir-chunk-pkl/model
test (3.8): test/test_ml.py#L192
TestUtil.test_ModelTest_fastl2lir_nochunk_bd_modelpath RuntimeError: W not found.
test (3.8): test/test_ml.py#L168
TestUtil.test_ModelTest_fastl2lir_nochunk_pkl_modelpath ValueError: Invalid model path: ./test_models/fastl2lir-nochunk-pkl/model.pkl
test (3.8): test/test_ml.py#L142
TestUtil.test_ModelTest_sklearn_nochunk_pkl FileNotFoundError: [Errno 2] No such file or directory: './test_models/lir-nochunk-pkl/model.pkl'
test (3.9): test/test_dataform_sparse.py#L70
TestUtil.test_load_array_jl FileNotFoundError: [Errno 2] Unable to synchronously open file (unable to open file: name = 'data/array_jl_dense_v1.mat', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)
test (3.9): test/test_dataform_sparse.py#L16
TestUtil.test_load_save_dense_array OSError: Unable to create or open file.
test (3.9): test/test_dataform_sparse.py#L42
TestUtil.test_load_save_sparse_array OSError: Unable to create or open file.
test (3.9): test/test_evals.py#L72
TestEval.test_2d FileNotFoundError: [Errno 2] No such file or directory: 'data/testdata-2d.pkl.gz'
test (3.9): test/test_evals.py#L88
TestEval.test_2d_nan FileNotFoundError: [Errno 2] No such file or directory: 'data/testdata-2d-nan.pkl.gz'
test (3.9): test/test_ml.py#L205
TestUtil.test_ModelTest_fastl2lir_chunk_bd_modelpath RuntimeError: W not found.
test (3.9): test/test_ml.py#L180
TestUtil.test_ModelTest_fastl2lir_chunk_pkl_modelpath ValueError: Invalid model path: ./test_models/fastl2lir-chunk-pkl/model
test (3.9): test/test_ml.py#L192
TestUtil.test_ModelTest_fastl2lir_nochunk_bd_modelpath RuntimeError: W not found.
test (3.9): test/test_ml.py#L168
TestUtil.test_ModelTest_fastl2lir_nochunk_pkl_modelpath ValueError: Invalid model path: ./test_models/fastl2lir-nochunk-pkl/model.pkl
test (3.9): test/test_ml.py#L142
TestUtil.test_ModelTest_sklearn_nochunk_pkl FileNotFoundError: [Errno 2] No such file or directory: './test_models/lir-nochunk-pkl/model.pkl'
Error code: `import-untyped`: bdpy/fig/tile_images.py#L4
Library stubs not installed for "PIL"
Error code: `import-untyped`: bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib.pyplot": module is installed, but missing library stubs or py.typed marker
Error code: `import-untyped`: bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib": module is installed, but missing library stubs or py.typed marker
Error code: `import-untyped`: bdpy/fig/tile_images.py#L6
Skipping analyzing "matplotlib.gridspec": module is installed, but missing library stubs or py.typed marker
Error code: `import-untyped`: bdpy/util/info.py#L13
Library stubs not installed for "yaml"
Error code: `arg-type`: bdpy/util/info.py#L24
Argument 1 to "md5" has incompatible type "str"; expected "Buffer"
Error code: `import-not-found`: bdpy/pipeline/config.py#L9
Cannot find implementation or library stub for module named "hydra.experimental"
Error code: `import-not-found`: bdpy/pipeline/config.py#L10
Cannot find implementation or library stub for module named "omegaconf"
Error code: `assignment`: bdpy/pipeline/config.py#L37
Incompatible types in assignment (expression has type "Path", variable has type "str")
Error code: `attr-defined`: bdpy/pipeline/config.py#L39
"str" has no attribute "stem"
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
type-check: bdpy/util/utils.py#L119
Possible overload variants:
type-check: bdpy/util/utils.py#L121
Possible overload variants:
Error code: `annotation-unchecked`: bdpy/dataform/features.py#L376
By default the bodies of untyped functions are not checked, consider using --check-untyped-defs
type-check: bdpy/stats/corr.py#L74
Possible overload variants: