bump to dev and update mkdocs

.github/workflows/build-docs.yml

@@ -40,6 +40,8 @@ jobs:
       - name: Build parameter docs
         run: nf-core schema docs --format markdown --columns parameter,description,default --output docs/parameters.md --force
       - name: Build docs
-        run: mike deploy --push --update-aliases ${{ env.plugin_version }} latest
-      - name: Set default docs
-        run: mike set-default --push latest
+        run: |
+          RELEASE=$(curl -sL https://api.github.com/repos/Joon-Klaps/viralgenie/releases | jq -r '.[0].tag_name')
+          echo "${RELEASE}"
+          mike deploy --push --update-aliases "${RELEASE}" latest
+          mike set-default --push latest

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/Joon-Klaps/viralgenie/0.1.1/" target="_blank">Joon-Klaps/viralgenie</a>
+  This report has been generated by the <a href="https://github.com/Joon-Klaps/viralgenie/dev/" target="_blank">Joon-Klaps/viralgenie</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://joon-klaps.github.io/viralgenie/0.1.1/usage/" target="_blank">documentation</a>.
+  <a href="https://joon-klaps.github.io/viralgenie/dev/usage/" target="_blank">documentation</a>.
 
 export_plots: true
 

nextflow.config

@@ -372,7 +372,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'main'
     nextflowVersion = '!>=23.04.0'
-    version         = '0.1.1'
+    version         = '0.1.1dev'
     doi             = ''
 }