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Add logic to allow samples with no reference hits to be analysed #799

Add logic to allow samples with no reference hits to be analysed

Add logic to allow samples with no reference hits to be analysed #799

Triggered via pull request August 7, 2024 20:30
Status Success
Total duration 28m 10s
Artifacts

ci.yml

on: pull_request
Matrix: Run pipeline with minimal test data and different cluster methods
Matrix: Run pipeline with test bad database for identifying potential references
Matrix: Run pipeline with test bad mapping constrained reference
Matrix: Run complete pipeline with more test data
Matrix: Run pipeline and skip everything
Matrix: Run pipeline with test umi data
Matrix: Run pipeline with test data
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24 warnings
Run pipeline with test bad mapping constrained reference (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline and skip everything (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test bad mapping constrained reference (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline and skip everything (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test bad database for identifying potential references (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test bad database for identifying potential references (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-linc...
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, cdhitest)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-clus...
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (23.04.0, bcftools, ivar)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-everything, bcftools, bcftools)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-everything, ivar, bcftools)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-everything, bcftools, ivar)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, vrhyme)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (23.04.0, ivar, ivar)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, vsearch)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (23.04.0, ivar, bcftools)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (23.04.0, bcftools, bcftools)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test umi data (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-everything, ivar, ivar)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with minimal test data and different cluster methods (latest-everything, mash)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test umi data (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run complete pipeline with more test data (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run complete pipeline with more test data (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/