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Display message if sequence ontology is unavailable (#453) #459

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Display message if sequence ontology is unavailable (#453) #459

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32 changes: 32 additions & 0 deletions packages/jbrowse-plugin-apollo/src/makeDisplayComponent.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,9 @@
import { SixFrameFeatureDisplay } from './SixFrameFeatureDisplay/stateModel'
import { TabularEditorPane } from './TabularEditor'

import { getSession } from '@jbrowse/core/util'

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import { ApolloSessionModel } from './session'

const accordionControlHeight = 12

const useStyles = makeStyles()((theme) => ({
Expand Down Expand Up @@ -155,6 +158,11 @@
}: {
model: LinearApolloDisplayI
}) {
const session = getSession(model) as unknown as ApolloSessionModel
const { ontologyManager } = session.apolloDataStore
const { featureTypeOntology } = ontologyManager

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const ontologyStore = featureTypeOntology?.dataStore

const { classes } = useStyles()

const {
Expand All @@ -177,6 +185,30 @@
useEffect(() => {
scrollSelectedFeatureIntoView(model, canvasScrollContainerRef)
}, [model, selectedFeature])

if (!ontologyStore) {
return (

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<div
style={{
display: 'flex',
alignItems: 'center',
justifyContent: 'center',
height: '25%',
}}
>
<p
style={{
color: 'DimGray',
fontSize: '100%',
backgroundColor: 'white',
}}
>
{'Sequence ontology not found. Please load one before continuing'}
</p>
</div>
)
}

return (
<div className={classes.details} style={{ height: overallHeight }}>
<AccordionControl
Expand Down