refactor: project structure PR

bin/cdxgen.js

@@ -10,6 +10,7 @@ import { findUpSync } from "find-up";
 import globalAgent from "global-agent";
 import { load as _load } from "js-yaml";
 import jws from "jws";
+import { createBom, submitBom } from "../lib/cli/index.js";
 import {
   printCallStack,
   printDependencyTree,
@@ -20,12 +21,11 @@ import {
   printSponsorBanner,
   printSummary,
   printTable,
-} from "../display.js";
-import { createBom, submitBom } from "../index.js";
-import { postProcess } from "../postgen.js";
-import { prepareEnv } from "../pregen.js";
-import { ATOM_DB } from "../utils.js";
-import { validateBom } from "../validator.js";
+} from "../lib/helpers/display.js";
+import { ATOM_DB, dirNameStr } from "../lib/helpers/utils.js";
+import { validateBom } from "../lib/helpers/validator.js";
+import { postProcess } from "../lib/stages/postgen/postgen.js";
+import { prepareEnv } from "../lib/stages/pregen/pregen.js";
 
 // Support for config files
 const configPath = findUpSync([
@@ -51,7 +51,7 @@ let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-const dirName = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+const dirName = dirNameStr;
 
 import yargs from "yargs";
 import { hideBin } from "yargs/helpers";
@@ -493,7 +493,7 @@ const checkPermissions = (filePath) => {
   printSponsorBanner(options);
   // Start SBOM server
   if (options.server) {
-    const serverModule = await import("../server.js");
+    const serverModule = await import("../lib/server/server.js");
     return serverModule.start(options);
   }
   // Check if cdxgen has the required permissions
@@ -666,7 +666,7 @@ const checkPermissions = (filePath) => {
     if (!options.evinseOutput) {
       options.evinseOutput = options.output;
     }
-    const evinserModule = await import("../evinser.js");
+    const evinserModule = await import("../lib/evinser/evinser.js");
     options.projectType = options.projectType || ["java"];
     const evinseOptions = {
       _: args._,
@@ -719,7 +719,7 @@ const checkPermissions = (filePath) => {
   }
   // Protobuf serialization
   if (options.exportProto) {
-    const protobomModule = await import("../protobom.js");
+    const protobomModule = await import("../lib/helpers/protobom.js");
     protobomModule.writeBinary(bomNSData.bomJson, options.protoBinFile);
   }
   if (options.print && bomNSData.bomJson && bomNSData.bomJson.components) {

bin/evinse.js

@@ -7,15 +7,19 @@ import { load as _load } from "js-yaml";
 // Evinse (Evinse Verification Is Nearly SBOM Evidence)
 import yargs from "yargs";
 import { hideBin } from "yargs/helpers";
+import {
+  analyzeProject,
+  createEvinseFile,
+  prepareDB,
+} from "../lib/evinser/evinser.js";
 import {
   printCallStack,
   printOccurrences,
   printReachables,
   printServices,
-} from "../display.js";
-import { analyzeProject, createEvinseFile, prepareDB } from "../evinser.js";
-import { ATOM_DB } from "../utils.js";
-import { validateBom } from "../validator.js";
+} from "../lib/helpers/display.js";
+import { ATOM_DB } from "../lib/helpers/utils.js";
+import { validateBom } from "../lib/helpers/validator.js";
 
 // Support for config files
 const configPath = findUpSync([

bin/repl.js

@@ -7,6 +7,7 @@ import process from "node:process";
 import repl from "node:repl";
 import jsonata from "jsonata";
 
+import { createBom } from "../lib/cli/index.js";
 import {
   printCallStack,
   printDependencyTree,
@@ -17,9 +18,8 @@ import {
   printSummary,
   printTable,
   printVulnerabilities,
-} from "../display.js";
-import { createBom } from "../index.js";
-import { validateBom } from "../validator.js";
+} from "../lib/helpers/display.js";
+import { validateBom } from "../lib/helpers/validator.js";
 
 const options = {
   useColors: true,

bin/verify.js

@@ -7,12 +7,13 @@ import { URL, fileURLToPath } from "node:url";
 import jws from "jws";
 import yargs from "yargs";
 import { hideBin } from "yargs/helpers";
+import { dirNameStr } from "../lib/helpers/utils.js";
 
 let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-const dirName = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+const dirName = dirNameStr;
 
 const args = yargs(hideBin(process.argv))
   .option("input", {

deno.json

@@ -1,17 +1,25 @@
 {
   "name": "@cyclonedx/cdxgen",
   "version": "10.10.0",
-  "exports": "./index.js",
+  "exports": "./lib/cli/index.js",
   "compilerOptions": {
     "allowJs": true,
     "lib": ["deno.window"],
     "exclude": ["*.test.js", "./types/**/*"],
     "strict": true
   },
-  "include": ["*.js", "data/", "bin/"],
-  "exclude": ["test/", "docs/", "contrib/", "ci/", "tools_config/"],
+  "include": ["*.js", "data/", "bin/", "lib/**"],
+  "exclude": [
+    "test/",
+    "docs/",
+    "contrib/",
+    "ci/",
+    "tools_config/",
+    ".github/",
+    ".*"
+  ],
   "lint": {
-    "include": ["bin/", "*.js"],
+    "include": ["bin/", "*.js", "lib/**"],
     "exclude": ["test/", "data/", "contrib/"],
     "rules": {
       "tags": ["recommended", "no-self-compare"],

jsr.json

@@ -1,7 +1,15 @@
 {
   "name": "@cyclonedx/cdxgen",
   "version": "10.10.0",
-  "exports": "./index.js",
-  "include": ["*.js", "bin/**", "data/**", "types/**"],
-  "exclude": ["test/", "docs/", "contrib/", "ci/", "tools_config/"]
+  "exports": "./lib/cli/index.js",
+  "include": ["*.js", "lib/**", "bin/**", "data/**", "types/**"],
+  "exclude": [
+    "test/",
+    "docs/",
+    "contrib/",
+    "ci/",
+    "tools_config/",
+    ".github/",
+    ".*"
+  ]
 }

index.js → lib/cli/index.js

@@ -27,7 +27,7 @@ import {
   getOriginUrl,
   gitTreeHashes,
   listFiles,
-} from "./envcontext.js";
+} from "../helpers/envcontext.js";
 import {
   CARGO_CMD,
   CLJ_CMD,
@@ -52,6 +52,7 @@ import {
   convertJarNSToPackages,
   convertOSQueryResults,
   determineSbtVersion,
+  dirNameStr,
   encodeForPurl,
   executeGradleProperties,
   executeParallelGradleProperties,
@@ -143,34 +144,34 @@ import {
   readZipEntry,
   recomputeScope,
   splitOutputByGradleProjects,
-} from "./utils.js";
+} from "../helpers/utils.js";
 let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-const dirName = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+const dirName = dirNameStr;
 
 const selfPJson = JSON.parse(
   readFileSync(join(dirName, "package.json"), "utf-8"),
 );
 const _version = selfPJson.version;
 import { gte, lte } from "semver";
-import { findJSImportsExports } from "./analyzer.js";
+import { findJSImportsExports } from "../helpers/analyzer.js";
+import { collectOSCryptoLibs } from "../helpers/cbomutils.js";
 import {
   executeOsQuery,
   getBinaryBom,
   getCargoAuditableInfo,
   getDotnetSlices,
   getOSPackages,
-} from "./binary.js";
-import { collectOSCryptoLibs } from "./cbomutils.js";
+} from "../managers/binary.js";
 import {
   addSkippedSrcFiles,
   exportArchive,
   exportImage,
   getPkgPathList,
   parseImageName,
-} from "./docker.js";
+} from "../managers/docker.js";
 
 const isWin = _platform() === "win32";
 

evinser.js → lib/evinser/evinser.js

@@ -4,8 +4,8 @@ import path from "node:path";
 import process from "node:process";
 import { PackageURL } from "packageurl-js";
 import { Op } from "sequelize";
-import { findCryptoAlgos } from "./cbomutils.js";
-import * as db from "./db.js";
+import { findCryptoAlgos } from "../helpers/cbomutils.js";
+import * as db from "../helpers/db.js";
 import {
   DEBUG_MODE,
   collectGradleDependencies,
@@ -15,7 +15,7 @@ import {
   getGradleCommand,
   getMavenCommand,
   getTimestamp,
-} from "./utils.js";
+} from "../helpers/utils.js";
 const DB_NAME = "evinser.db";
 const typePurlsCache = {};
 

cbomutils.js → lib/helpers/cbomutils.js

@@ -1,6 +1,6 @@
 import { readFileSync } from "node:fs";
 import { join } from "node:path";
-import { executeOsQuery } from "./binary.js";
+import { executeOsQuery } from "../managers/binary.js";
 import { convertOSQueryResults, dirNameStr } from "./utils.js";
 const cbomosDbQueries = JSON.parse(
   readFileSync(join(dirNameStr, "data", "cbomosdb-queries.json"), "utf-8"),

utils.js → lib/helpers/utils.js

@@ -49,13 +49,17 @@ import {
 import toml from "toml";
 import { IriValidationStrategy, validateIri } from "validate-iri";
 import { xml2js } from "xml-js";
-import { getTreeWithPlugin } from "./piptree.js";
+import { getTreeWithPlugin } from "../managers/piptree.js";
 
 let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-export const dirNameStr = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+// TODO: verify if this is a good method (Prabhu)
+// this is due to dirNameStr being "cdxgen/lib/helpers" which causes errors
+export const dirNameStr = import.meta
+  ? dirname(dirname(dirname(fileURLToPath(url))))
+  : __dirname;
 export const isWin = platform() === "win32";
 export const isMac = platform() === "darwin";
 export let ATOM_DB = join(homedir(), ".local", "share", ".atomdb");

validator.js → lib/helpers/validator.js

@@ -3,14 +3,14 @@ import { dirname, join } from "node:path";
 import Ajv from "ajv";
 import addFormats from "ajv-formats";
 import { PackageURL } from "packageurl-js";
-import { DEBUG_MODE, isPartialTree } from "./utils.js";
+import { DEBUG_MODE, dirNameStr, isPartialTree } from "./utils.js";
 
 import { URL, fileURLToPath } from "node:url";
 let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-const dirName = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+const dirName = dirNameStr;
 
 /**
  * Validate the generated bom using jsonschema

binary.js → lib/managers/binary.js

@@ -16,17 +16,18 @@ import {
   DEBUG_MODE,
   TIMEOUT_MS,
   adjustLicenseInformation,
+  dirNameStr,
   findLicenseId,
   isSpdxLicenseExpression,
-} from "./utils.js";
+} from "../helpers/utils.js";
 
 import { URL, fileURLToPath } from "node:url";
 
 let url = import.meta.url;
 if (!url.startsWith("file://")) {
   url = new URL(`file://${import.meta.url}`).toString();
 }
-const dirName = import.meta ? dirname(fileURLToPath(url)) : __dirname;
+const dirName = dirNameStr;
 
 const isWin = _platform() === "win32";
 

docker.js → lib/managers/docker.js

@@ -24,7 +24,7 @@ import { parse } from "node:url";
 import { globSync } from "glob";
 import got from "got";
 import { x } from "tar";
-import { DEBUG_MODE, getAllFiles } from "./utils.js";
+import { DEBUG_MODE, getAllFiles } from "../helpers/utils.js";
 
 export const isWin = _platform() === "win32";
 export const DOCKER_HUB_REGISTRY = "docker.io";

server.js → lib/server/server.js

@@ -7,8 +7,8 @@ import process from "node:process";
 import url from "node:url";
 import bodyParser from "body-parser";
 import connect from "connect";
-import { createBom, submitBom } from "./index.js";
-import { postProcess } from "./postgen.js";
+import { createBom, submitBom } from "../cli/index.js";
+import { postProcess } from "../stages/postgen/postgen.js";
 
 import compression from "compression";
 

postgen.js → lib/stages/postgen/postgen.js

@@ -3,7 +3,11 @@ import { tmpdir } from "node:os";
 import { join } from "node:path";
 import process from "node:process";
 import { PackageURL } from "packageurl-js";
-import { DEBUG_MODE, dirNameStr, hasAnyProjectType } from "./utils.js";
+import {
+  DEBUG_MODE,
+  dirNameStr,
+  hasAnyProjectType,
+} from "../../helpers/utils.js";
 
 /**
  * Filter and enhance BOM post generation.

pregen.js → lib/stages/pregen/pregen.js

@@ -8,8 +8,8 @@ import {
   installSdkmanTool,
   isNvmAvailable,
   isSdkmanAvailable,
-} from "./envcontext.js";
-import { DEBUG_MODE, hasAnyProjectType } from "./utils.js";
+} from "../../helpers/envcontext.js";
+import { DEBUG_MODE, hasAnyProjectType } from "../../helpers/utils.js";
 
 /**
  * Method to prepare the build environment for BOM generation purposes.

package.json

@@ -37,7 +37,7 @@
     }
   ],
   "type": "module",
-  "exports": "./index.js",
+  "exports": "./lib/cli/index.js",
   "types": "./types/index.d.ts",
   "bin": {
     "cdxgen": "bin/cdxgen.js",
@@ -48,7 +48,7 @@
     "cdx-verify": "bin/verify.js"
   },
   "scripts": {
-    "test": "node --experimental-vm-modules node_modules/jest/bin/jest.js --inject-globals false docker.test.js utils.test.js display.test.js postgen.test.js",
+    "test": "node --experimental-vm-modules node_modules/jest/bin/jest.js --inject-globals false lib/managers/docker.test.js lib/helpers/utils.test.js lib/helpers/display.test.js lib/stages/postgen/postgen.test.js",
     "watch": "node --experimental-vm-modules node_modules/jest/bin/jest.js --watch --inject-globals false",
     "lint:check": "biome check",
     "lint": "biome check --fix",
@@ -115,7 +115,7 @@
     "sequelize": "^6.37.3",
     "sqlite3": "^5.1.7"
   },
-  "files": ["*.js", "bin/", "data/", "types/"],
+  "files": ["*.js", "lib/**", "bin/", "data/", "types/"],
   "devDependencies": {
     "@biomejs/biome": "1.8.3",
     "jest": "^29.7.0",