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@garrettwrong garrettwrong released this 06 Jan 19:19
v0.10.1
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Learn about vigilant mode.

ASPIRE v0.10.1 is a patch release focused on adding several API improvements, bug fixes, and CI updates.

This release provides the following features:

  • Synthetic volume generators (Legacy and compact Asymmetric, Cn, Dn, T, O)
  • confuse based ASPIRE config
  • Multi dimensional stack axis for Image and Volume
  • Parallel and batched BFR and BFSR alignment
  • Scale colorbar for Image.show utilities
  • Implement and check top level imports (import aspire)
  • Restores ability to use cufinufft via config
  • NoiseAdder framework and updates

Documentation and Logging:

  • User configuration tutorial
  • Dramatically reduced console log spam
  • Replaced some logging with tqdm progress bars
  • Support user/runtime logger and tqdm configuration
  • Updated simulation docstring
  • Docstring formatting
  • Pipeline demo gallery

Bug Fixes and Cleanup:

  • Updates rotation convention to be counter-clockwise
  • Real coefficient rotations
  • Normalize background dtype
  • Fourier Bessel zero finding cleanup
  • im_translate and preprocessing cleanup/deprecation
  • CTFEstimator and voltage_to_wavelength unit fixes
  • CTF starfile output column name
  • Unit test fixes for averagers
  • Pytest parallel processing limits
  • Added missing paramatrized test cases
  • Gaussian 2D and 3D util cleanup
  • Unified transpose and flip for Volume and Image
  • covar2d ells mask bug fix
  • Consistently use recent about_axis() and Volume.load()
  • ImageSource.save() dict return
  • Remove Micrograph and MrcStack in favor of ImageSource
  • Consistent use of fft module
  • Dtype updates (Basis, Simulation, Volume, CLOrient3D, nufft)
  • Filter indices bug fix
  • Migration to Image.Resolution from Image.res (via DeprecationWarning)
  • Workaround for scipy==v0.10.0 2D interpolation
  • importlib resources updates

Systems/CI Updates:

  • GPU CI
  • Daily documentation build testing (develop)
  • CI config and additional logging
  • Disable ray on Azure for OSX and Windows
  • Adds pytest-xdist plugin for developers
  • Support building docs without running gallery
  • Updates for latest scikit-learn release
  • Began migration towards pure pytests
  • tox v4 support
  • Azure OSX 12 updates
  • Github actions v3/v4 updates
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