Complete changeset for issue #82

BenLangmead · Aug 28, 2019 · af0227f · af0227f
1 parent b775498
commit af0227f
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/hit.h b/hit.h
@@ -280,7 +280,7 @@ class HitSink {
 				numMaxed += ptNumMaxed_[i];
 			}
 
-			uint64_t tot = numAligned + numUnaligned + numMaxed;
+			uint64_t tot = numAligned + numUnaligned;
 			double alPct = 0.0, unalPct = 0.0, maxPct = 0.0;
 			if(tot > 0) {
 				alPct   = 100.0 * (double)numAligned / (double)tot;

diff --git a/sam.cpp b/sam.cpp
@@ -308,8 +308,8 @@ void SAMHitSink::reportMaxed(
 	size_t threadId,
 	PatternSourcePerThread& p)
 {
+	HitSink::reportMaxed(hs, threadId, p);
 	if(sampleMax_) {
-		HitSink::reportMaxed(hs, threadId, p);
 		RandomSource rand;
 		rand.init(p.bufa().seed);
 		assert_gt(hs.size(), 0);
@@ -351,7 +351,5 @@ void SAMHitSink::reportMaxed(
 			uint32_t r = rand.nextU32() % num;
 			reportHits(&hs[r], NULL, 0, 1, threadId, 0, (int)hs.size()+1, true, p.rdid());
 		}
-	} else {
-		reportUnOrMax(p, &hs, threadId, false);
 	}
 }