From b939bfb9fbc92629e2a9739520e67b09859e4bd0 Mon Sep 17 00:00:00 2001 From: Xian Date: Mon, 3 Jun 2024 14:17:25 -0400 Subject: [PATCH] Fix command line downsmapling parameters to match what they're doing --- src/subcommand/giraffe_main.cpp | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/subcommand/giraffe_main.cpp b/src/subcommand/giraffe_main.cpp index d49e7fe5c06..ce2e7f40825 100644 --- a/src/subcommand/giraffe_main.cpp +++ b/src/subcommand/giraffe_main.cpp @@ -184,16 +184,16 @@ static std::unique_ptr get_options() { "use maximum of number minimizers calculated by READ_LENGTH / INT and --max-min" ); comp_opts.add_range( - "downsample-window-count", + "downsample-window-length", &MinimizerMapper::minimizer_downsampling_max_window_length, MinimizerMapper::default_minimizer_downsampling_max_window_length, - "downsample minimizers with windows of length read_length/INT, 0 for no downsampling" + "maximum window length for downsampling" ); comp_opts.add_range( - "downsample-window-length", + "downsample-window-count", &MinimizerMapper::minimizer_downsampling_window_count, MinimizerMapper::default_minimizer_downsampling_window_count, - "maximum window length for downsampling" + "downsample minimizers with windows of length read_length/INT, 0 for no downsampling" ); comp_opts.add_range( "distance-limit", 'D',