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I couldn't install horovod in grover conda environment. #16

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eungyeonglee-dev opened this issue Jun 17, 2022 · 0 comments
Open

I couldn't install horovod in grover conda environment. #16

eungyeonglee-dev opened this issue Jun 17, 2022 · 0 comments

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@eungyeonglee-dev
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eungyeonglee-dev commented Jun 17, 2022

I wanna use grover in multi-gpu environment so I've tried to install horovod in my grover conda env. but I got this error message.

Import Error

Traceback (most recent call last):
File "", line 1, in
File "/home/eung0/miniconda3/envs/grover_1/lib/python3.6/site-packages/horovod/torch/init.py", line 44, in
from horovod.torch.mpi_ops import allreduce, allreduce_async, allreduce_, allreduce_async_
File "/home/eung0/miniconda3/envs/grover_1/lib/python3.6/site-packages/horovod/torch/mpi_ops.py", line 31, in
from horovod.torch import mpi_lib_v2 as mpi_lib
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version GLIBCXX_3.4.30' not found (required by /home/eung0/miniconda3/envs/grover_1/lib/python3.6/site-packages/horovod/torch/mpi_lib_v2.cpython-36m-x86_64-linux-gnu.so)`

command

HOROVOD_WITH_PYTORCH=1 HOROVOD_WITHOUT_TENSORFLOW=1 HOROVOD_GPU_OPERATIONS=NCCL pip install --no-cache-dir --force-reinstall horovod[pytorch]==0.19.5

grover conda env

_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
blas 1.0 mkl conda-forge
boost 1.68.0 py36h8619c78_1001 conda-forge
boost-cpp 1.68.0 h11c811c_1000 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
ca-certificates 2020.6.20 hecda079_0 rmg
cairo 1.16.0 h18b612c_1001 conda-forge
descriptastorus 2.2.0 py_0 rmg
expat 2.4.8 h27087fc_0 conda-forge
fontconfig 2.14.0 h8e229c2_0 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
gettext 0.19.8.1 hf34092f_1004 conda-forge
glib 2.66.3 h58526e2_0 conda-forge
icu 58.2 hf484d3e_1000 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h166bdaf_1 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
lerc 3.0 h9c3ff4c_0 conda-forge
libblas 3.9.0 8_mkl conda-forge
libboost 1.67.0 h46d08c1_4
libcblas 3.9.0 8_mkl conda-forge
libdeflate 1.10 h7f98852_0 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgfortran-ng 7.5.0 h14aa051_20 conda-forge
libgfortran4 7.5.0 h14aa051_20 conda-forge
libglib 2.66.3 hbe7bbb4_0 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.9.0 8_mkl conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libtiff 4.3.0 h0fcbabc_4 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp-base 1.2.2 h7f98852_1 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libzlib 1.2.12 h166bdaf_0 conda-forge
llvm-openmp 14.0.4 he0ac6c6_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
mkl 2020.4 h726a3e6_304 conda-forge
mkl_fft 1.0.10 py36_0 conda-forge
mkl_random 1.1.1 py36h830a2c2_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
numpy 1.16.4 py36h7e9f1db_0
numpy-base 1.16.4 py36hde5b4d6_0
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1g h516909a_0 rmg
pandas 0.25.0 py36hb3f55d8_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pillow 8.3.2 py36h676a545_0 conda-forge
pip 21.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
py-boost 1.67.0 py36h04863e7_4
python 3.6.8 h0371630_0
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.6 2_cp36m conda-forge
pytz 2022.1 pyhd8ed1ab_0 conda-forge
rdkit 2020.03.3.0 py36hc20afe1_1 rmg
readline 7.0 h7b6447c_5
scikit-learn 0.21.2 py36hcdab131_1 conda-forge
scipy 1.3.0 py36h921218d_1 conda-forge
setuptools 58.0.4 py36h5fab9bb_2 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.28.0 h8b20d00_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
torch 1.7.1+cu101 pypi_0 pypi
torchaudio 0.7.2 pypi_0 pypi
torchvision 0.8.2+cu101 pypi_0 pypi
tqdm 4.32.1 py_0 conda-forge
typing 3.6.4 py36_0 conda-forge
typing_extensions 3.10.0.2 pyha770c72_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
zlib 1.2.12 h166bdaf_0 conda-forge
zstd 1.5.2 h8a70e8d_1 conda-forge

which version should I install?

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