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Using trackpy.batch() on bioformats images in parallel #726

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MMarkovetz opened this issue Mar 8, 2023 · 0 comments
Open

Using trackpy.batch() on bioformats images in parallel #726

MMarkovetz opened this issue Mar 8, 2023 · 0 comments

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@MMarkovetz
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Hello. I have run into an issue where I can read in an Olympus .vsi file using the pims Bioformats framework, but I cannot process them using the trackpy.batch() method unless I set the argument processes=1. If using more than one process, the wheels just spin without any noted progress. I think it may have to do with creating multiple Java Virtual Machines, but it's a bit beyond me.

I am happy to attach an example .vsi file if helpful with the warning that it is quite large.

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