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Update GenBank sequences #123

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pjotrp opened this issue Jan 8, 2021 · 1 comment

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Data enhancement in progress

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pjotrp commented Jan 8, 2021 •

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I have rewritten the GenBank puller so we should be able to do weekly runs. Still need to normalize

Geo data
Assembly method
Sequencing method

Furthermore

Rewrite step should not overwrite files (doh!)

And then I'll probably have to fix the ontology checker to match the new fields

ontology check - run on CLI

Next update the CWL run to limit processing

pjotrp self-assigned this

pjotrp added Data enhancement in progress labels

pjotrp added this to the Go live 1.0 milestone

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pjotrp commented May 9, 2021

Normalization of data is complete, though not perfect. The next step is to write out the accompanying RDF

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