glib fails with fatal error: dbus/dbus.h: No such file or directoryLinux

[albertz]

Additional Info

• I am using Windows Subsystem for Linux

Output of brew config

HOMEBREW_VERSION: 4.0.4-196-g180c89e
ORIGIN: https://github.com/Homebrew/brew
HEAD: 180c89e17426d4fb1562ac1b2bbe0c4c6e1a3cec
Last commit: 16 hours ago
Core tap origin: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 7bb622790099bdfd89325bc3c4e7f9991e34201e
Core tap last commit: 44 minutes ago
Core tap branch: master
HOMEBREW_PREFIX: /work/tools/users/zeyer/linuxbrew
HOMEBREW_REPOSITORY: /work/tools/users/zeyer/linuxbrew
HOMEBREW_CELLAR: /work/tools/users/zeyer/linuxbrew/Cellar
HOMEBREW_ARCH: core2
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: :0
HOMEBREW_FORCE_BREWED_CA_CERTIFICATES: set
HOMEBREW_FORCE_BREWED_CURL: set
HOMEBREW_MAKE_JOBS: 6
HOMEBREW_NO_INSTALL_FROM_API: set
Homebrew Ruby: 2.6.8 => /work/tools/users/zeyer/linuxbrew/Library/Homebrew/vendor/portable-ruby/2.6.8_1/bin/ruby
CPU: hexa-core 64-bit skylake
Clang: 3.8.0 build 380
Git: 2.33.0 => /work/tools/users/zeyer/linuxbrew/bin/git
Curl: 7.79.1 => /work/tools/users/zeyer/linuxbrew/opt/curl/bin/curl
Kernel: Linux 4.15.0-46-generic x86_64 GNU/Linux
OS: Ubuntu 16.04.7 LTS (xenial)
Host glibc: 2.23
/usr/bin/gcc: 5.4.0
/usr/bin/ruby: 2.3.1
glibc: 2.35_1
gcc@11: 11.3.0
gcc: 12.2.0
xorg: N/A

Output of brew doctor

Warning: Some installed kegs have no formulae!
This means they were either deleted or installed manually.
You should find replacements for the following formulae:
  szip

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/fftw.h
  /usr/local/include/rfftw.h

Warning: Unbrewed '.la' files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected '.la' files:
  /usr/local/lib/libfftw.la
  /usr/local/lib/librfftw.la

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libfftw.a
  /usr/local/lib/librfftw.a

Warning: You have unlinked kegs in your Cellar.
Leaving kegs unlinked can lead to build-trouble and cause formulae that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
  [email protected]
  gnutls
  sdl2
  perl
  [email protected]
  nghttp2
  open-mpi
Error: /work/tools/users/zeyer/linuxbrew/Cellar/jack/1.9.22 is not a directory

Description of issue

brew install glib fails (actually I wanted to brew install qemu, but glib is a depenceny).

I actually fixed it by adding depends_on "dbus" in the glib.rb formula.

I wanted to fill in an issue, but I can't work on fixing those brew doctor issues currently. (Although they all should be irrelevant here.)

==> Installing qemu dependency: glib
==> Patching
==> Applying hardcoded-paths.diff
patching file gio/xdgmime/xdgmime.c
Hunk #1 succeeded at 244 (offset 9 lines).
patching file glib/gutils.c
Hunk #1 succeeded at 2586 (offset 506 lines).
==> meson setup build --default-library=both --localstatedir=/work/tools/users/zeyer/linuxbrew/var -Diconv=auto 
==> meson compile -C build --verbose
Last 15 lines from /u/zeyer/.cache/Homebrew/Logs/glib/02.meson:
[1012/1421] g++-11  -o gio/tests/cxx-17 gio/tests/cxx-17.p/cxx.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 
...
FAILED: gio/tests/gdbus-server-auth.p/gdbus-server-auth.c.o 
gcc-11 -Igio/tests/gdbus-server-auth.p -Igio/tests -I../gio/tests -I. -I.. -Iglib -I../glib -Igmodule -I../gmodu
le -Igobject -I../gobject -Igio -I../gio -I/work/tools/users/zeyer/linuxbrew/Cellar/dbus/1.14.6/include/dbus-1.0
 -I/work/tools/users/zeyer/linuxbrew/Cellar/dbus/1.14.6/lib/dbus-1.0/include -fdiagnostics-color=always -D_FILE_
OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=gnu99 -O3 -D_GNU_SOURCE -fno-strict-aliasing -DG_DISA
BLE_CAST_CHECKS -Wduplicated-branches -Wimplicit-fallthrough -Wmisleading-indentation -Wunused -Wno-unused-param
eter -Wno-cast-function-type -Wno-pedantic -Wno-format-zero-length -Wno-variadic-macros -Werror=format=2 -Werror
=init-self -Werror=missing-include-dirs -Werror=pointer-arith -Werror=unused-result -Wstrict-prototypes -Wno-bad
-function-cast -Werror=declaration-after-statement -Werror=implicit-function-declaration -Werror=missing-prototy
pes -Werror=pointer-sign '-DG_LOG_DOMAIN="GLib-GIO"' '-DGLIB_MKENUMS="gobject/glib-mkenums"' '-DGLIB_COMPILE_SCH
EMAS="/tmp/glib-20230304-11406-qvcyfg/glib-2.74.6/build/gio/glib-compile-schemas"' -UG_DISABLE_ASSERT -DHAVE_OPE
NPTY -MD -MQ gio/tests/gdbus-server-auth.p/gdbus-server-auth.c.o -MF gio/tests/gdbus-server-auth.p/gdbus-server-
auth.c.o.d -o gio/tests/gdbus-server-auth.p/gdbus-server-auth.c.o -c ../gio/tests/gdbus-server-auth.c
../gio/tests/gdbus-server-auth.c:31:10: fatal error: dbus/dbus.h: No such file or directory
   31 | #include <dbus/dbus.h>
      |          ^~~~~~~~~~~~~
compilation terminated.
...

[albertz]

As said, I actually fixed it by adding depends_on "dbus" in the glib.rb formula.

Maybe someone can create a PR? I was doing so, but I cannot really check all the checkboxes from the guidelines.

[gabelevi]

I'm not sure if it's the same issue, but glibc is failing to install with a different error. Seems to be the same as this: https://discourse.gnome.org/t/unable-to-install-glib-with-homebrew-installed-in-home-location-on-a-macos-arm64/15110

I have brew installed at ~/homebrew. The error looks like

[476/1355] /private/tmp/glib-20230428-79420-1h0vcws/glib-2.76.2/build/glib/gtester -k --quiet --i-know-this-is-deprecated -o glib/tests/tmpsample.xml --test-arg=--gtester-selftest /private/tmp/glib-20230428-79420-1h0vcws/glib-2.76.2/build/glib/gtester
FAILED: glib/tests/tmpsample.xml
/private/tmp/glib-20230428-79420-1h0vcws/glib-2.76.2/build/glib/gtester -k --quiet --i-know-this-is-deprecated -o glib/tests/tmpsample.xml --test-arg=--gtester-selftest /private/tmp/glib-20230428-79420-1h0vcws/glib-2.76.2/build/glib/gtester

I tried the suggested fix in this thread (and also tried checking out the pull request (Homebrew/homebrew-core#129242) but no luck

Output of brew config

HOMEBREW_VERSION: 4.0.15-97-ge191b82
ORIGIN: https://github.com/Homebrew/brew
HEAD: e191b827cce991f52be36b0a8fc3daed3ef66143
Last commit: 15 hours ago
Core tap origin: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 9613d5e4f1d552a59955d1b9e652d063b4b96683
Core tap last commit: 51 minutes ago
Core tap branch: master
HOMEBREW_PREFIX: /Users/glevi/homebrew
HOMEBREW_REPOSITORY: /Users/glevi/homebrew
HOMEBREW_CELLAR: /Users/glevi/homebrew/Cellar
HOMEBREW_CASK_OPTS: []
HOMEBREW_MAKE_JOBS: 12
HOMEBREW_NO_INSTALL_FROM_API: set
Homebrew Ruby: 2.6.10 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby
CPU: dodeca-core 64-bit arm_blizzard_avalanche
Clang: 14.0.0 build 1400
Git: 2.37.1 => /Applications/Xcode_14.2.0_14C18_fb.app/Contents/Developer/usr/bin/git
Curl: 7.87.0 => /usr/bin/curl
macOS: 13.3-arm64
CLT: 14.3.0.0.1.1679647830
Xcode: 14.2 => /Applications/Xcode_14.2.0_14C18_fb.app/Contents/Developer
Rosetta 2: false

Output of brew doctor

Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
  /usr/local/lib/libjson-c.2.dylib
  /usr/local/lib/libykpers-1.1.dylib
  /usr/local/lib/libyubikey.0.dylib
  /usr/local/lib/libyubikey.dylib

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libyubikey.a

Warning: Your Homebrew's prefix is not /opt/homebrew.

Many of Homebrew's bottles (binary packages) can only be used with the default prefix.
Consider uninstalling Homebrew and reinstalling into the default prefix.
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Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.


Warning: /usr/bin occurs before /Users/glevi/homebrew/bin in your PATH.
This means that system-provided programs will be used instead of those
provided by Homebrew. Consider setting your PATH so that
/Users/glevi/homebrew/bin occurs before /usr/bin. Here is a one-liner:
  echo 'export PATH="/Users/glevi/homebrew/bin:$PATH"' >> ~/.zshrc

The following tools exist at both paths:
  python3
  pip3

Warning: Your Xcode (14.2) is outdated.
Please update to Xcode 14.3 (or delete it).
Xcode can be updated from the App Store.