From 2707a2385e140f0a0a57095c64b22d5afb0e0592 Mon Sep 17 00:00:00 2001
From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com>
Date: Thu, 4 Jan 2024 12:38:11 +0000
Subject: [PATCH] Refresh imports 2024-01-04 (#2257)
* Refresh imports 2024-01-04
* Update hra_subset.owl
---
src/ontology/components/hra_subset.owl | 63 ++----
src/ontology/imports/merged_import.owl | 302 +++++++++++++------------
2 files changed, 178 insertions(+), 187 deletions(-)
diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl
index e6df5fd66..ea0fe45d2 100644
--- a/src/ontology/components/hra_subset.owl
+++ b/src/ontology/components/hra_subset.owl
@@ -253,15 +253,6 @@
-
-
-
-
-
-
-
-
-
@@ -550,15 +541,6 @@
-
-
-
-
-
-
-
-
-
@@ -1261,6 +1243,15 @@
+
+
+
+
+
+
+
+
+
@@ -2647,6 +2638,15 @@
+
+
+
+
+
+
+
+
+
@@ -3439,15 +3439,6 @@
-
-
-
-
-
-
-
-
-
@@ -4078,24 +4069,6 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
index e33bc6ccb..a3130a3e2 100644
--- a/src/ontology/imports/merged_import.owl
+++ b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=)
Ontology(
-
-Annotation(owl:versionInfo "2023-12-05")
+
+Annotation(owl:versionInfo "2024-01-04")
Declaration(Class())
Declaration(Class())
@@ -12865,6 +12865,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -13696,6 +13697,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
@@ -13811,6 +13813,8 @@ Declaration(ObjectProperty())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
+Declaration(ObjectProperty())
+Declaration(ObjectProperty())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
Declaration(ObjectProperty())
@@ -14032,6 +14036,7 @@ Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
+Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
@@ -14091,7 +14096,6 @@ Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
-Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
Declaration(AnnotationProperty())
@@ -14373,6 +14377,10 @@ AnnotationAssertion( "abbreviation")
SubAnnotationPropertyOf( )
+# Annotation Property: ()
+
+SubAnnotationPropertyOf( )
+
# Annotation Property: (plural form)
AnnotationAssertion( "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)")
@@ -14383,7 +14391,7 @@ AnnotationAssertion( "plural form")
SubAnnotationPropertyOf( )
-# Annotation Property: (never_in_taxon)
+# Annotation Property: (never in taxon)
AnnotationAssertion( "tooth SubClassOf 'never in taxon' value 'Aves'")
AnnotationAssertion(Annotation( "PMID:20973947") "S never_in_taxon T iff: S SubClassOf in_taxon only not T.")
@@ -14580,10 +14588,6 @@ SubAnnotationPropertyOf( <
SubAnnotationPropertyOf( )
-# Annotation Property: ()
-
-SubAnnotationPropertyOf( )
-
# Annotation Property: ()
SubAnnotationPropertyOf( )
@@ -16635,6 +16639,29 @@ AnnotationAssertion(rdfs:seeAlso "ht
SubObjectPropertyOf( )
InverseObjectProperties( )
+# Object Property: (connecting branch of)
+
+AnnotationAssertion( "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1.")
+AnnotationAssertion( "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.")
+AnnotationAssertion( )
+AnnotationAssertion( "RO:0002252")
+AnnotationAssertion( "uberon")
+AnnotationAssertion( "connecting_branch_of")
+AnnotationAssertion( "connecting_branch_of")
+AnnotationAssertion(rdfs:label "connecting branch of")
+AnnotationAssertion(rdfs:seeAlso )
+SubObjectPropertyOf( )
+SubObjectPropertyOf( )
+InverseObjectProperties( )
+
+# Object Property: (has connecting branch)
+
+AnnotationAssertion( "inverse of connecting branch of")
+AnnotationAssertion( )
+AnnotationAssertion( )
+AnnotationAssertion(rdfs:label "has connecting branch")
+SubObjectPropertyOf( )
+
# Object Property: (has developmental contribution from)
AnnotationAssertion( "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]")
@@ -112876,8 +112903,8 @@ SubClassOf( )
AnnotationAssertion( "GC_ID:1")
AnnotationAssertion(Annotation( ) "Mus")
-AnnotationAssertion(Annotation( ) "mice")
-AnnotationAssertion(Annotation( ) "mouse")
+AnnotationAssertion(Annotation( ) "mice")
+AnnotationAssertion(Annotation( ) "mouse")
AnnotationAssertion( "ncbi_taxonomy")
AnnotationAssertion( "NCBITaxon:10088")
AnnotationAssertion(rdfs:label "Mus ")
@@ -112889,7 +112916,7 @@ AnnotationAssertion( "NCBITaxon:85055")
AnnotationAssertion( "GC_ID:1")
AnnotationAssertion(Annotation( ) "house mouse")
-AnnotationAssertion(Annotation( ) "mouse")
+AnnotationAssertion(Annotation( ) "mouse")
AnnotationAssertion( "ncbi_taxonomy")
AnnotationAssertion( "NCBITaxon:10090")
AnnotationAssertion(rdfs:label "Mus musculus")
@@ -112948,7 +112975,7 @@ SubClassOf( )
AnnotationAssertion( "GC_ID:1")
-AnnotationAssertion(Annotation( ) "gamophytes")
+AnnotationAssertion(Annotation( ) "gamophytes")
AnnotationAssertion( "ncbi_taxonomy")
AnnotationAssertion(Annotation( ) "Conjugatophyceae")
AnnotationAssertion(Annotation( ) "Gamophyceae")
@@ -113111,7 +113138,7 @@ AnnotationAssertion( "GC_ID:1")
AnnotationAssertion( "PMID:11557979")
AnnotationAssertion( "PMID:9727836")
-AnnotationAssertion(Annotation( ) "mandibulates")
+AnnotationAssertion(Annotation( ) "mandibulates")
AnnotationAssertion( "ncbi_taxonomy")
AnnotationAssertion( "NCBITaxon:197563")
AnnotationAssertion(rdfs:label "Mandibulata")
@@ -113308,7 +113335,7 @@ AnnotationAssertion( "PMID:23020233")
AnnotationAssertion( "PMID:30257078")
AnnotationAssertion(Annotation( ) "eucaryotes")
-AnnotationAssertion(Annotation( ) "eukaryotes")
+AnnotationAssertion(Annotation( ) "eukaryotes")
AnnotationAssertion( "ncbi_taxonomy")
AnnotationAssertion(Annotation( ) "Eucarya")
AnnotationAssertion(Annotation( )