From 2707a2385e140f0a0a57095c64b22d5afb0e0592 Mon Sep 17 00:00:00 2001 From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com> Date: Thu, 4 Jan 2024 12:38:11 +0000 Subject: [PATCH] Refresh imports 2024-01-04 (#2257) * Refresh imports 2024-01-04 * Update hra_subset.owl --- src/ontology/components/hra_subset.owl | 63 ++---- src/ontology/imports/merged_import.owl | 302 +++++++++++++------------ 2 files changed, 178 insertions(+), 187 deletions(-) diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl index e6df5fd66..ea0fe45d2 100644 --- a/src/ontology/components/hra_subset.owl +++ b/src/ontology/components/hra_subset.owl @@ -253,15 +253,6 @@ - - - - - - - - - @@ -550,15 +541,6 @@ - - - - - - - - - @@ -1261,6 +1243,15 @@ + + + + + + + + + @@ -2647,6 +2638,15 @@ + + + + + + + + + @@ -3439,15 +3439,6 @@ - - - - - - - - - @@ -4078,24 +4069,6 @@ - - - - - - - - - - - - - - - - - - diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index e33bc6ccb..a3130a3e2 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-12-05") + +Annotation(owl:versionInfo "2024-01-04") Declaration(Class()) Declaration(Class()) @@ -12865,6 +12865,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13696,6 +13697,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -13811,6 +13813,8 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -14032,6 +14036,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -14091,7 +14096,6 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -14373,6 +14377,10 @@ AnnotationAssertion( "abbreviation") SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: (plural form) AnnotationAssertion( "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)") @@ -14383,7 +14391,7 @@ AnnotationAssertion( "plural form") SubAnnotationPropertyOf( ) -# Annotation Property: (never_in_taxon) +# Annotation Property: (never in taxon) AnnotationAssertion( "tooth SubClassOf 'never in taxon' value 'Aves'") AnnotationAssertion(Annotation( "PMID:20973947") "S never_in_taxon T iff: S SubClassOf in_taxon only not T.") @@ -14580,10 +14588,6 @@ SubAnnotationPropertyOf( < SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: () SubAnnotationPropertyOf( ) @@ -16635,6 +16639,29 @@ AnnotationAssertion(rdfs:seeAlso "ht SubObjectPropertyOf( ) InverseObjectProperties( ) +# Object Property: (connecting branch of) + +AnnotationAssertion( "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1.") +AnnotationAssertion( "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.") +AnnotationAssertion( ) +AnnotationAssertion( "RO:0002252") +AnnotationAssertion( "uberon") +AnnotationAssertion( "connecting_branch_of") +AnnotationAssertion( "connecting_branch_of") +AnnotationAssertion(rdfs:label "connecting branch of") +AnnotationAssertion(rdfs:seeAlso ) +SubObjectPropertyOf( ) +SubObjectPropertyOf( ) +InverseObjectProperties( ) + +# Object Property: (has connecting branch) + +AnnotationAssertion( "inverse of connecting branch of") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "has connecting branch") +SubObjectPropertyOf( ) + # Object Property: (has developmental contribution from) AnnotationAssertion( "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]") @@ -112876,8 +112903,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Mus") -AnnotationAssertion(Annotation( ) "mice") -AnnotationAssertion(Annotation( ) "mouse") +AnnotationAssertion(Annotation( ) "mice") +AnnotationAssertion(Annotation( ) "mouse") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10088") AnnotationAssertion(rdfs:label "Mus ") @@ -112889,7 +112916,7 @@ AnnotationAssertion( "NCBITaxon:85055") AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "house mouse") -AnnotationAssertion(Annotation( ) "mouse") +AnnotationAssertion(Annotation( ) "mouse") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10090") AnnotationAssertion(rdfs:label "Mus musculus") @@ -112948,7 +112975,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "gamophytes") +AnnotationAssertion(Annotation( ) "gamophytes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Conjugatophyceae") AnnotationAssertion(Annotation( ) "Gamophyceae") @@ -113111,7 +113138,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:11557979") AnnotationAssertion( "PMID:9727836") -AnnotationAssertion(Annotation( ) "mandibulates") +AnnotationAssertion(Annotation( ) "mandibulates") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:197563") AnnotationAssertion(rdfs:label "Mandibulata") @@ -113308,7 +113335,7 @@ AnnotationAssertion( "PMID:23020233") AnnotationAssertion( "PMID:30257078") AnnotationAssertion(Annotation( ) "eucaryotes") -AnnotationAssertion(Annotation( ) "eukaryotes") +AnnotationAssertion(Annotation( ) "eukaryotes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Eucarya") AnnotationAssertion(Annotation( ) "Eucaryotae") @@ -113371,7 +113398,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "ape") +AnnotationAssertion(Annotation( ) "ape") AnnotationAssertion(Annotation( ) "apes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:314295") @@ -113391,9 +113418,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "higher plants") -AnnotationAssertion(Annotation( ) "land plants") -AnnotationAssertion(Annotation( ) "plants") +AnnotationAssertion(Annotation( ) "higher plants") +AnnotationAssertion(Annotation( ) "land plants") +AnnotationAssertion(Annotation( ) "plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "land plants") AnnotationAssertion( "NCBITaxon:3193") @@ -113476,7 +113503,7 @@ AnnotationAssertion( "PMID:30257078") AnnotationAssertion(Annotation( ) "Chlorophyta/Embryophyta group") AnnotationAssertion(Annotation( ) "chlorophyte/embryophyte group") -AnnotationAssertion(Annotation( ) "green plants") +AnnotationAssertion(Annotation( ) "green plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Chlorobionta") AnnotationAssertion(Annotation( ) "Chloroplastida") @@ -113511,7 +113538,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "metazoans") -AnnotationAssertion(Annotation( ) "multicellular animals") +AnnotationAssertion(Annotation( ) "multicellular animals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Animalia") AnnotationAssertion(Annotation( ) "animals") @@ -113541,7 +113568,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "deuterostomes") +AnnotationAssertion(Annotation( ) "deuterostomes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:33511") AnnotationAssertion(rdfs:label "Deuterostomia") @@ -113623,7 +113650,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:25249442") -AnnotationAssertion(Annotation( ) "angiosperms") +AnnotationAssertion(Annotation( ) "angiosperms") AnnotationAssertion(Annotation( ) "flowering plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Angiospermae") @@ -113673,7 +113700,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "glaucocystophytes") +AnnotationAssertion(Annotation( ) "glaucocystophytes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Glaucophyceae") AnnotationAssertion(Annotation( ) "Glaucophyta") @@ -113717,8 +113744,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "dinosaur") -AnnotationAssertion(Annotation( ) "dinosaurs") +AnnotationAssertion(Annotation( ) "dinosaur") +AnnotationAssertion(Annotation( ) "dinosaurs") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:436486") AnnotationAssertion(rdfs:label "Dinosauria") @@ -113793,7 +113820,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:17572334") AnnotationAssertion(Annotation( ) "ascomycetes") -AnnotationAssertion(Annotation( ) "sac fungi") +AnnotationAssertion(Annotation( ) "sac fungi") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "ascomycete fungi") AnnotationAssertion( "NCBITaxon:4890") @@ -113878,14 +113905,16 @@ SubClassOf( (Saccharomyces cerevisiae) AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:41870") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "S. cerevisiae") -AnnotationAssertion(Annotation( ) "baker's yeast") -AnnotationAssertion(Annotation( ) "brewer's yeast") +AnnotationAssertion(Annotation( ) "Saccharomyces cerevisiae 'var. diastaticus'") +AnnotationAssertion(Annotation( ) "baker's yeast") +AnnotationAssertion(Annotation( ) "brewer's yeast") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Candida robusta") AnnotationAssertion(Annotation( ) "Mycoderma cerevisiae") AnnotationAssertion(Annotation( ) "Saccharomyces capensis") +AnnotationAssertion(Annotation( ) "Saccharomyces diastaticus") AnnotationAssertion(Annotation( ) "Saccharomyces italicus") AnnotationAssertion(Annotation( ) "Saccharomyces oviformis") AnnotationAssertion(Annotation( ) "Saccharomyces uvarum var. melibiosus") @@ -113948,7 +113977,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "vascular plants") +AnnotationAssertion(Annotation( ) "vascular plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "vascular plants") AnnotationAssertion( "NCBITaxon:58023") @@ -113959,7 +113988,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "seed plants") +AnnotationAssertion(Annotation( ) "seed plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "seed plants") AnnotationAssertion( "NCBITaxon:58024") @@ -113980,7 +114009,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "cnidarians") -AnnotationAssertion(Annotation( ) "coelenterates") +AnnotationAssertion(Annotation( ) "coelenterates") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Coelenterata") AnnotationAssertion(Annotation( ) "cnidarians") @@ -113992,7 +114021,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "flatworm") +AnnotationAssertion(Annotation( ) "flatworm") AnnotationAssertion(Annotation( ) "flatworms") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "flatworms") @@ -114004,9 +114033,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "nematode") -AnnotationAssertion(Annotation( ) "nematodes") -AnnotationAssertion(Annotation( ) "roundworm") +AnnotationAssertion(Annotation( ) "nematode") +AnnotationAssertion(Annotation( ) "nematodes") +AnnotationAssertion(Annotation( ) "roundworm") AnnotationAssertion(Annotation( ) "roundworms") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Nemata") @@ -114019,8 +114048,10 @@ SubClassOf( ) AnnotationAssertion( "NCBITaxon:33251") +AnnotationAssertion( "NCBITaxon:6308") AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Strongylida") AnnotationAssertion( "NCBITaxon:6236") AnnotationAssertion(rdfs:label "Rhabditida") SubClassOf( ) @@ -114137,8 +114168,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion(Annotation( ) "ray-finned fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Actinopterygi") @@ -114221,8 +114252,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "eutherian mammals") -AnnotationAssertion(Annotation( ) "placental mammals") +AnnotationAssertion(Annotation( ) "eutherian mammals") +AnnotationAssertion(Annotation( ) "placental mammals") AnnotationAssertion(Annotation( ) "placentals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Placentalia") @@ -114248,8 +114279,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "New World monkeys") -AnnotationAssertion(Annotation( ) "monkey") -AnnotationAssertion(Annotation( ) "monkeys") +AnnotationAssertion(Annotation( ) "monkey") +AnnotationAssertion(Annotation( ) "monkeys") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9479") AnnotationAssertion(rdfs:label "Platyrrhini") @@ -114283,8 +114314,8 @@ SubClassOf( ) AnnotationAssertion( "NCBITaxon:9484") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "common marmoset") -AnnotationAssertion(Annotation( ) "white ear-tufted marmoset") +AnnotationAssertion(Annotation( ) "common marmoset") +AnnotationAssertion(Annotation( ) "white ear-tufted marmoset") AnnotationAssertion(Annotation( ) "white-tufted-ear marmoset") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Callithrix jacchus jacchus") @@ -114326,7 +114357,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "humans") +AnnotationAssertion(Annotation( ) "humans") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9605") AnnotationAssertion(rdfs:label "Homo") @@ -114369,8 +114400,8 @@ AnnotationAssertion( "PMID:17600185") AnnotationAssertion( "PMID:8581300") AnnotationAssertion( "PMID:8603894") -AnnotationAssertion(Annotation( ) "cat") -AnnotationAssertion(Annotation( ) "cats") +AnnotationAssertion(Annotation( ) "cat") +AnnotationAssertion(Annotation( ) "cats") AnnotationAssertion(Annotation( ) "domestic cat") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Felis domesticus") @@ -130014,6 +130045,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "BFO:0000003") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000000") AnnotationAssertion( ) @@ -133226,8 +133258,6 @@ AnnotationAssertion(rdfs:seeAlso AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "the mouth contains structures such as jaw skeleton that may not strictly be considered tract parts") ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "exceptions in some taxa") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -135426,7 +135456,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0000457") AnnotationAssertion(rdfs:label "cavernous artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (endocervix) @@ -136053,7 +136083,7 @@ EquivalentClasses( ObjectIntersec EquivalentClasses( ObjectUnionOf( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "http://palaeos.com/metazoa/porifera/homoscleromorpha.html") ObjectSomeValuesFrom( )) # Class: (simple cuboidal epithelium) @@ -139718,6 +139748,7 @@ AnnotationAssertion( ) AnnotationAssertion( "AAO:0010841") AnnotationAssertion( "AEO:0000000") +AnnotationAssertion( "BFO:0000004") AnnotationAssertion( "BILA:0000000") AnnotationAssertion( "BIRNLEX:6") AnnotationAssertion( "CARO:0000000") @@ -139948,7 +139979,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pericardial cavity) AnnotationAssertion(Annotation( "Wikipedia:Pericardium") "A potential space between the visceral and parietal layers of the pericardium.") -AnnotationAssertion(Annotation( "PMID:20959416") ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0002220") Annotation( "TAO") Annotation( "ZFIN:curator") "Anatomical space in which the heart is located and is surrounded by the pericardium.[TAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000556") Annotation( "VHOG") Annotation( "ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206") Annotation( "http://bgee.unil.ch/") "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart (of other tetrapods) is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]") AnnotationAssertion(Annotation( "ZFA") "check ZFA, should actually be thoracic cavity. Note that Hyman defines the cavity as the space between the heart and the sac (but defines the sac as parietal)") @@ -142505,7 +142535,7 @@ AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (middle colic artery) @@ -142529,7 +142559,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (ileocolic artery) @@ -142552,7 +142582,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (mucosa of stomach) @@ -145407,7 +145437,7 @@ AnnotationAssertion( "inferior vesical artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (superior vesical artery) @@ -145432,6 +145462,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (external iliac vein) @@ -146034,7 +146065,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "deep femoral artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (medial circumflex femoral artery) @@ -146054,7 +146085,7 @@ AnnotationAssertion( "medial circumflex femoral artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (cerebrospinal fluid) @@ -146283,6 +146314,7 @@ AnnotationAssertion( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (subscapular artery) @@ -148656,7 +148688,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (skin of hip) @@ -149387,7 +149419,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "AA") Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "AA") Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (facial artery) @@ -149408,7 +149440,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "facial artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (occipital artery) @@ -149428,7 +149460,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipital artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (maxillary artery) @@ -149487,7 +149519,7 @@ AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (coronary artery) @@ -149538,7 +149570,7 @@ AnnotationAssertion( "lacrimal artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (posterior communicating artery) @@ -149570,9 +149602,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior communicating artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") Annotation( "ZFA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") Annotation( "ZFA") ObjectSomeValuesFrom( )) # Class: (muscle organ) @@ -152005,7 +152037,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lacrimal canaliculus) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac.") -AnnotationAssertion( "TODO - resolve lacrimal canaliculus vs lacrimal duct") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37624") AnnotationAssertion( "FMA:58245") AnnotationAssertion( "MA:0001294") @@ -152015,6 +152046,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_canaliculi") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_canaliculi") Annotation( ) "canaliculus lacrimalis") +AnnotationAssertion(Annotation( "ISBN:1587341026") Annotation( "https://www.bartleby.com/lit-hub/anatomy-of-the-human-body/fig-896/") "lacrimal duct") AnnotationAssertion( "UBERON:0001770") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lacrimal canaliculus") @@ -154105,7 +154137,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lacrimal drainage system) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct.") -AnnotationAssertion( "TODO - resolve lacrimal canaliculus vs larcimal duct") AnnotationAssertion(Annotation( "PMID:7559104") ) AnnotationAssertion( "chelonians lack a lacrimal duct, and lacrimal/harderian secretions remain in or spill from the conjunctival sac[PMID:7559104]") AnnotationAssertion( "EMAPA:19245") @@ -156250,7 +156281,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelium of nasopharynx) @@ -158489,8 +158520,6 @@ AnnotationAssertion( "Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]") AnnotationAssertion(rdfs:label "lung") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/701"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) @@ -158655,7 +158684,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior suprarenal artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (phrenic artery) @@ -158696,7 +158725,7 @@ AnnotationAssertion( "femoral artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png"^^xsd:anyURI) SubClassOf( ) -SubClassOf(Annotation( "FMA") Annotation( "WP") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") Annotation( "WP") ObjectSomeValuesFrom( )) # Class: (truncus arteriosus) @@ -159596,7 +159625,6 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Skin.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb"^^xsd:anyURI) SubClassOf( ) @@ -160875,8 +160903,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right lung") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -160902,8 +160928,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left lung") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -161051,8 +161075,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "segmental bronchus") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) @@ -161099,8 +161121,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchus") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) @@ -165424,6 +165444,7 @@ AnnotationAssertion( "Wikipedia:Nasolacrimal_duct") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Nasolacrimal_duct") Annotation( ) "d. nasolacrimalis") +AnnotationAssertion(Annotation( "PMID:30285382") "lacrimal duct") AnnotationAssertion(Annotation( "Wikipedia:Nasolacrimal_duct") "tear duct") AnnotationAssertion( "UBERON:0002392") AnnotationAssertion( ) @@ -166706,7 +166727,7 @@ AnnotationAssertion( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intersomitic artery) @@ -167422,7 +167443,7 @@ SubClassOf(Annotation( "PMI SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -170166,7 +170187,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "caudal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) # Class: (sclerotome) @@ -170508,7 +170529,7 @@ AnnotationAssertion(rdfs:label " SubClassOf( ) SubClassOf(Annotation( "ZFA") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pharyngeal arch 3) @@ -170920,7 +170941,6 @@ AnnotationAssertion( "trachea") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^xsd:anyURI) SubClassOf( ) @@ -170951,6 +170971,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "Wikipedia:Cranium_(anatomy)") Annotation( "http://orcid.org/0000-0002-6601-2165") "Upper portion of the skull that excludes the mandible (when present in the organism).") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "cranial") AnnotationAssertion(Annotation( "FMA") "the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium") AnnotationAssertion(Annotation( "WP") "The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton") @@ -170981,12 +171002,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cranium") SubClassOf(Annotation( "FMA-inferred") ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (skull) AnnotationAssertion(Annotation( "PMID:11523816") Annotation( "Wikipedia:Skull") Annotation( "http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376") "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP].") -AnnotationAssertion( ) AnnotationAssertion(Annotation( "FMA") "in FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible.") AnnotationAssertion( "in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton") AnnotationAssertion(Annotation( "WP") "A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates") @@ -173242,8 +173261,6 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0003404") AnnotationAssertion(rdfs:label "lobar bronchus of right lung") -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -173263,8 +173280,6 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0003405") AnnotationAssertion(rdfs:label "lobar bronchus of left lung") -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -174062,7 +174077,7 @@ AnnotationAssertion( "ureteric segment of renal artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (respiratory system artery) @@ -174093,7 +174108,7 @@ AnnotationAssertion( "artery of upper lip") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (artery of lower lip) @@ -174115,7 +174130,7 @@ AnnotationAssertion( "artery of lower lip") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (cerebellar artery) @@ -176234,8 +176249,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "trachea cartilage") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -176870,7 +176883,6 @@ AnnotationAssertion( "cranial suture") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO") ) -SubClassOf(Annotation( "PMID:16496288") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (foramen magnum) @@ -178897,7 +178909,6 @@ AnnotationAssertion( "BTO:0000956") AnnotationAssertion( "EHDAA2:0004567") AnnotationAssertion( "EMAPA:32928") -AnnotationAssertion( "FBbt:00047143") AnnotationAssertion( "FBbt:00047166") AnnotationAssertion( "MA:0003201") AnnotationAssertion( "NCIT:C12963") @@ -184308,8 +184319,6 @@ AnnotationAssertion( "UBERON:0004548") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left eye") -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -184330,8 +184339,6 @@ AnnotationAssertion( "UBERON:0004549") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right eye") -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -184590,7 +184597,7 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal efferent arteriole) @@ -190694,8 +190701,7 @@ AnnotationAssertion( "deferent duct artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) # Class: (thoracic vein) @@ -193362,7 +193368,7 @@ AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (segment of pes) @@ -196164,10 +196170,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "eye trabecular meshwork") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) @@ -196331,7 +196333,7 @@ AnnotationAssertion(rdfs:comment AnnotationAssertion(rdfs:label "vitelline artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "ventral branch") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "ventral branch") ObjectSomeValuesFrom( )) # Class: (integumentary adnexa) @@ -197776,7 +197778,6 @@ AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000944") Annotation( "TAO") "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]") AnnotationAssertion( "AAO:0011024") AnnotationAssertion( "EFO:0003595") -AnnotationAssertion( "HBA:4413") AnnotationAssertion( "TAO:0000944") AnnotationAssertion( "XAO:0000465") AnnotationAssertion( "ZFA:0000944") @@ -198569,7 +198570,7 @@ AnnotationAssertion( "UBERON:0006632") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "musculo-phrenic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (muscle layer of oviduct) @@ -199126,7 +199127,6 @@ EquivalentClasses( ObjectIntersec SubClassOf(Annotation( "FMA") ) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "facial series") Annotation( "Kardong-abduced") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (areolar connective tissue) @@ -209605,7 +209605,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spleen trabecular artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "MP") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "MP") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (spleen trabecular vein) @@ -209831,10 +209831,6 @@ AnnotationAssertion(Annotation( "UBERON:0010427") AnnotationAssertion(rdfs:label "ciliary processes") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) -AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) @@ -211012,7 +211008,6 @@ AnnotationAssertion( "UBERON:0010913") AnnotationAssertion(rdfs:label "vertebral element") SubClassOf(Annotation( "VSAO") Annotation( "https://github.com/obophenotype/uberon/issues/82") ) -SubClassOf(Annotation( "VSAO") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) # Class: (cleidooccipital muscle) @@ -211516,7 +211511,6 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton"^^xsd:anyURI) SubClassOf(Annotation( "FMA") ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (postcranial axial skeletal system) @@ -212478,7 +212472,7 @@ SubClassOf(Annotation( "EHD SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2-abduced") ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (embryonic cardiovascular system) @@ -214006,7 +214000,7 @@ AnnotationAssertion( "deep cervical artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (transverse cervical artery) @@ -214950,6 +214944,19 @@ AnnotationAssertion( "vein of abdomen") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pulmonary venous system) + +AnnotationAssertion(Annotation( "ISBN:0073040584") Annotation( "Wikipedia:Pulmonary_venous_system") "The part of the venous system that drains the lungs[Kardong].") +AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_circulation") "Pulmonary circulation is the half portion of the cardiovascular system which carries oxygen-depleted blood away from the heart, to the lungs, and returns oxygenated (oxygen-rich) blood back to the heart. The term pulmonary circulation is readily paired and contrasted with the systemic circulation. A separate system known as the bronchial circulation supplies blood to the tissue of the larger airways of the lung.") +AnnotationAssertion( "Wikipedia:Pulmonary_venous_system") +AnnotationAssertion( "pulmonary venous circulatory system") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013127") +AnnotationAssertion(rdfs:label "pulmonary venous system") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (vein of lip) AnnotationAssertion(Annotation( "OBOL:automatic") "A vein that drains a lip.") @@ -216860,7 +216867,7 @@ AnnotationAssertion( "deep auricular artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (extraembryonic venous system) @@ -217162,7 +217169,7 @@ AnnotationAssertion( "brainstem white matter") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (skeletal muscle organ) +# Class: (skeletal muscle organ, vertebrate) AnnotationAssertion(Annotation( "GOC:dos") "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles).") AnnotationAssertion( "skeletal muscle") @@ -217187,9 +217194,10 @@ AnnotationAssertion( "ZFA:0005277") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0014892") -AnnotationAssertion(rdfs:label "skeletal muscle organ") +AnnotationAssertion(rdfs:label "skeletal muscle organ, vertebrate") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (primordial vasculature) @@ -218044,7 +218052,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "proper hepatic artery") SubClassOf(Annotation( "MA") ) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (left hepatic artery) @@ -219150,7 +219158,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "PHENOSCAPE:Nizar") "A bony structure embedded in skin, roughly equivalent to osteoderms.") AnnotationAssertion( "bony tubercle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "UBERONTEMP:3b77fb04-1e62-43af-a84b-5d5eb7388525") Annotation( ) "bony tubercles") +AnnotationAssertion(Annotation( ) "bony tubercles") AnnotationAssertion( "UBERON:0017163") AnnotationAssertion(rdfs:label "skin bony tubercle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -219391,7 +219399,6 @@ AnnotationAssertion(Annotation( "May be homologous with the transverse processes of cervical vertebra") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37825") AnnotationAssertion( "MESH:D057070") -AnnotationAssertion( "UBERONTEMP:d522e981-3a43-4cab-9862-4344b5c3ff22") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018144") AnnotationAssertion(rdfs:label "cervical rib") @@ -219515,7 +219522,7 @@ AnnotationAssertion( "The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP]") AnnotationAssertion(rdfs:label "thymic artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) # Class: (thyroid vein) @@ -219591,7 +219598,7 @@ AnnotationAssertion(Annotation( "UBERON:0018255") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (lacrimal vein) @@ -219645,7 +219652,6 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "PHENOSCAPE:Alex") "Tissue that is part of some adrenal gland.") AnnotationAssertion( "TODO - describe typology of adrenal gland tissue used in this ontology") AnnotationAssertion( "NCIT:C32051") -AnnotationAssertion( "UBERONTEMP:a7bf197b-0db2-467e-824e-be45b39e2672") AnnotationAssertion(Annotation( "ncithesaurus:Adrenal_Gland_Tissue") "adrenal gland tissue") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018303") @@ -219655,7 +219661,6 @@ EquivalentClasses( ObjectIntersec # Class: (foramen for glossopharyngeal nerve) AnnotationAssertion(Annotation( "PHENOSCAPE:alex") "Foramen that allows the passge of the glossopharyngeal nerve (cranial nerve IX).") -AnnotationAssertion( "UBERONTEMP:9ca0bda7-9111-4f59-bc72-5d47bc3d7d61") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018321") AnnotationAssertion(rdfs:label "foramen for glossopharyngeal nerve") @@ -219665,7 +219670,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ilioischiadic foramen) AnnotationAssertion(Annotation( "PHENOSCAPE:alex") "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993).") -AnnotationAssertion( "UBERONTEMP:63e09c69-ac98-49ba-b232-2da5c7b19019") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018326") AnnotationAssertion(rdfs:label "ilioischiadic foramen") @@ -221449,7 +221453,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0035237") AnnotationAssertion(rdfs:label "branch of internal carotid artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (neck of gallbladder) @@ -221529,7 +221533,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0035398") AnnotationAssertion(rdfs:label "branch of external carotid artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (posterior wall of nasopharynx) @@ -222224,7 +222228,6 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "AAO:0010270") -AnnotationAssertion( "AEO:0000154") AnnotationAssertion( "ZFA:0005594") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0036215") @@ -222852,7 +222855,7 @@ AnnotationAssertion( "UBERON:0039261") AnnotationAssertion(rdfs:label "pancreatic artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethral artery) @@ -224149,7 +224152,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medullary arteriole of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medullary venule of lymph node) @@ -224654,7 +224657,6 @@ EquivalentClasses( ObjectIntersec # Class: (placental blood) AnnotationAssertion(Annotation( "http://orcid.org/0000-0001-6595-0902") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK53254/") "Blood located in the placenta.") -AnnotationAssertion( ) AnnotationAssertion( "2022-04-04T11:06:09Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8470000") @@ -224978,13 +224980,28 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (chorionic plate blood vessel) AnnotationAssertion(Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK53254/") "A blood vessel that is part of the chorionic plate.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2023-09-14T09:09:36Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8600021") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chorionic plate blood vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pulmonary venule) + +AnnotationAssertion(Annotation( "PMID:22283705") Annotation( "PMID:30247823") "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa.") +AnnotationAssertion( ) +AnnotationAssertion( "2023-10-24T11:26:27Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600024") +AnnotationAssertion(rdfs:label "pulmonary venule") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + ############################ # Named Individuals @@ -225234,6 +225251,7 @@ SubClassOf(ObjectIntersectionOf( SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "PMID:16496288") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "MP") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "JB") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "PMID:16417468") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))