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Add 89 traits related to APO #323

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rays22 opened this issue Mar 20, 2024 · 1 comment · May be fixed by #325
Open

Add 89 traits related to APO #323

rays22 opened this issue Mar 20, 2024 · 1 comment · May be fixed by #325
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@rays22

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@rays22
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rays22 commented Mar 20, 2024

This issue is part of the work that is needed to fix obophenotype/upheno#928 .

Add the following classes to OBA:

object_id object_label entity entity_label quality quality_label
OBA:2045461 cell wall morphology GO:0005618 cell wall PATO:0000051 morphology
OBA:2045462 bud neck morphology GO:0005935 cellular bud neck PATO:0000051 morphology
OBA:2045463 bud morphology GO:0005933 cellular bud PATO:0000051 morphology
OBA:2045464 vacuolar morphology GO:0005773 vacuole PATO:0000051 morphology
OBA:2045465 actin cytoskeleton morphology GO:0015629 actin cytoskeleton PATO:0000051 morphology
OBA:2045466 spindle morphology GO:0005819 spindle PATO:0000051 morphology
OBA:2045467 nuclear position GO:0005634 nucleus PATO:0000140 position
OBA:2045468 position of spindle pole body GO:0005816 spindle pole body PATO:0000140 position
OBA:2045469 response to external stimulus trait GO:0009605 response to external stimulus PATO:0001236 process quality
OBA:2045470 mitochondrial genome maintenance trait GO:0000002 mitochondrial genome maintenance PATO:0001236 process quality
OBA:2045471 cell budding trait GO:0007114 cell budding PATO:0001236 process quality
OBA:2045472 traversing start control point of mitotic cell cycle trait GO:0007089 traversing start control point of mitotic cell cycle PATO:0001236 process quality
OBA:2045473 G2/M transition of mitotic cell cycle trait GO:0000086 G2/M transition of mitotic cell cycle PATO:0001236 process quality
OBA:2045474 metaphase/anaphase transition of mitotic cell cycle trait GO:0007091 metaphase/anaphase transition of mitotic cell cycle PATO:0001236 process quality
OBA:2045475 cell cycle trait GO:0007049 cell cycle PATO:0001236 process quality
OBA:2045476 mitotic G2 phase trait GO:0000085 mitotic G2 phase PATO:0001236 process quality
OBA:2045477 mitotic G1 phase trait GO:0000080 mitotic G1 phase PATO:0001236 process quality
OBA:2045478 mitotic M phase trait GO:0000087 mitotic M phase PATO:0001236 process quality
OBA:2045479 mitotic anaphase trait GO:0000090 mitotic anaphase PATO:0001236 process quality
OBA:2045480 mitotic anaphase A trait GO:0000091 mitotic anaphase A PATO:0001236 process quality
OBA:2045481 mitotic anaphase B trait GO:0000092 mitotic anaphase B PATO:0001236 process quality
OBA:2045482 mitotic metaphase trait GO:0000089 mitotic metaphase PATO:0001236 process quality
OBA:2045483 mitotic telophase trait GO:0000093 mitotic telophase PATO:0001236 process quality
OBA:2045484 mitotic S phase trait GO:0000084 mitotic S phase PATO:0001236 process quality
OBA:2045485 G1 to G0 transition trait GO:0070314 G1 to G0 transition PATO:0001236 process quality
OBA:2045486 G0 to G1 transition trait GO:0045023 G0 to G1 transition PATO:0001236 process quality
OBA:2045487 cell cycle G1/S phase transition trait GO:0044843 cell cycle G1/S phase transition PATO:0001236 process quality
OBA:2045488 cellular respiration trait GO:0045333 cellular respiration PATO:0001236 process quality
OBA:2045489 ascospore wall assembly trait GO:0030476 ascospore wall assembly PATO:0001236 process quality
OBA:2045490 cell growth trait GO:0016049 cell growth PATO:0001236 process quality
OBA:2045491 mitochondrial transport trait GO:0006839 mitochondrial transport PATO:0001236 process quality
OBA:2045492 fermentation trait GO:0006113 fermentation PATO:0001236 process quality
OBA:2045493 catalytic activity trait GO:0003824 catalytic activity PATO:0001236 process quality
OBA:2045494 filamentous growth trait GO:0030447 filamentous growth PATO:0001236 process quality
OBA:2045495 invasive filamentous growth trait GO:0036267 invasive filamentous growth PATO:0001236 process quality
OBA:2045496 pseudohyphal growth trait GO:0007124 pseudohyphal growth PATO:0001236 process quality
OBA:2045497 response to pheromone trait GO:0019236 response to pheromone PATO:0001236 process quality
OBA:2045498 cell-cell fusion trait GO:0140253 cell-cell fusion PATO:0001236 process quality
OBA:2045499 nuclear membrane fusion involved in karyogamy trait GO:0048288 nuclear membrane fusion involved in karyogamy PATO:0001236 process quality
OBA:2045500 pheromone biosynthetic process trait GO:0042811 pheromone biosynthetic process PATO:0001236 process quality
OBA:2045501 mating projection formation trait GO:0031382 mating projection formation PATO:0001236 process quality
OBA:2045502 meiotic cell cycle trait GO:0051321 meiotic cell cycle PATO:0001236 process quality
OBA:2045503 reciprocal meiotic recombination trait GO:0007131 reciprocal meiotic recombination PATO:0001236 process quality
OBA:2045504 sporulation trait GO:0043934 sporulation PATO:0001236 process quality
OBA:2045505 spore germination trait GO:0009847 spore germination PATO:0001236 process quality
OBA:2045506 heterochromatin formation trait GO:0031507 heterochromatin formation PATO:0001236 process quality
OBA:2045507 DNA transposition trait GO:0006313 DNA transposition PATO:0001236 process quality
OBA:2045508 flocculation trait GO:0000128 flocculation PATO:0001236 process quality
OBA:2045509 cytokinesis trait GO:0000910 cytokinesis PATO:0001236 process quality
OBA:2045510 mitotic cell cycle trait GO:0000278 mitotic cell cycle PATO:0001236 process quality
OBA:2045511 intracellular transport trait GO:0046907 intracellular transport PATO:0001236 process quality
OBA:2045512 autophagy trait GO:0006914 autophagy PATO:0001236 process quality
OBA:2045513 endocytosis trait GO:0006897 endocytosis PATO:0001236 process quality
OBA:2045514 nuclear transport trait GO:0051169 nuclear transport PATO:0001236 process quality
OBA:2045515 protein secretion trait GO:0009306 protein secretion PATO:0001236 process quality
OBA:2045516 vacuolar transport trait GO:0007034 vacuolar transport PATO:0001236 process quality
OBA:2045517 response to nutrient levels trait GO:0031667 response to nutrient levels PATO:0001236 process quality
OBA:2045518 carbon utilization trait GO:0015976 carbon utilization PATO:0001236 process quality
OBA:2045519 nitrogen utilization trait GO:0019740 nitrogen utilization PATO:0001236 process quality
OBA:2045520 import across plasma membrane trait GO:0098739 import across plasma membrane PATO:0001236 process quality
OBA:2045521 re-entry into mitotic cell cycle after pheromone arrest trait GO:0000321 re-entry into mitotic cell cycle after pheromone arrest PATO:0001236 process quality
OBA:2045522 mitotic cell cycle G1 arrest in response to pheromone trait GO:0000751 mitotic cell cycle G1 arrest in response to pheromone PATO:0001236 process quality
OBA:2045523 phosphorus utilization trait GO:0006794 phosphorus utilization PATO:0001236 process quality
OBA:2045524 import into nucleus trait GO:0051170 import into nucleus PATO:0001236 process quality
OBA:2045525 nuclear export trait GO:0051168 nuclear export PATO:0001236 process quality
OBA:2045526 peroxisomal transport trait GO:0043574 peroxisomal transport PATO:0001236 process quality
OBA:2045527 intracellular protein transport trait GO:0006886 intracellular protein transport PATO:0001236 process quality
OBA:2045528 transport trait GO:0006810 transport PATO:0001236 process quality
OBA:2045529 protein modification process trait GO:0036211 protein modification process PATO:0001236 process quality
OBA:2045530 RNA localization trait GO:0006403 RNA localization PATO:0001236 process quality
OBA:2045531 chromosome organization trait GO:0051276 chromosome organization PATO:0001236 process quality
OBA:2045532 oxidative phosphorylation trait GO:0006119 oxidative phosphorylation PATO:0001236 process quality
OBA:2045533 apoptotic process trait GO:0006915 apoptotic process PATO:0001236 process quality
OBA:2045534 biofilm formation trait GO:0042710 biofilm formation PATO:0001236 process quality
OBA:2045535 mating type switching trait GO:0007533 mating type switching PATO:0001236 process quality
OBA:2045536 chromosome segregation trait GO:0007059 chromosome segregation PATO:0001236 process quality
OBA:2045537 sulfur utilization trait GO:0006791 sulfur utilization PATO:0001236 process quality
OBA:2045538 programmed necrotic cell death trait GO:0097300 programmed necrotic cell death PATO:0001236 process quality
OBA:2045539 septin ring assembly trait GO:0000921 septin ring assembly PATO:0001236 process quality
OBA:2045540 excretion trait GO:0007588 excretion PATO:0001236 process quality
OBA:2045541 mitotic recombination trait GO:0006312 mitotic recombination PATO:0001236 process quality
OBA:2045542 pexophagy trait GO:0000425 pexophagy PATO:0001236 process quality
OBA:2045543 mitophagy trait GO:0000423 mitophagy PATO:0001236 process quality
OBA:2045544 RNA modification trait GO:0009451 RNA modification PATO:0001236 process quality
OBA:2045545 cell adhesion trait GO:0007155 cell adhesion PATO:0001236 process quality
OBA:2045546 cell death trait GO:0008219 cell death PATO:0001236 process quality
OBA:2045547 nucleophagy trait GO:0044804 nucleophagy PATO:0001236 process quality
OBA:2045548 ribophagy trait GO:0034517 ribophagy PATO:0001236 process quality
OBA:2045549 reticulophagy trait GO:0061709 reticulophagy PATO:0001236 process quality
@rays22 rays22 self-assigned this Mar 20, 2024
@rays22 rays22 mentioned this issue Mar 20, 2024
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@matentzn
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This is fantastic @rays22! THANKS!

@matentzn matentzn mentioned this issue Mar 25, 2024
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rays22 added a commit that referenced this issue Mar 27, 2024
@rays22
Add new traits related to APO
3ed180a 
If applied, this commit will fix #323.
@rays22 rays22 linked a pull request Mar 27, 2024 that will close this issue
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Add new traits related to APO obophenotype/bio-attribute-ontology
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