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Track clinical measurement mappings #301

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rays22 opened this issue Nov 1, 2023 · 1 comment
Open
2 tasks

Track clinical measurement mappings #301

rays22 opened this issue Nov 1, 2023 · 1 comment
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Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits

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@rays22
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rays22 commented Nov 1, 2023

Track the clinical measurement-OBA mapping here.

Background

There at least three different categories where the targeted laboratory terminology types fit.

  1. Terminology that map to existing OBA trait terms.
    For example,
    Body weight skos:exactMatch OBA:VT0001259 body mass
  2. Terminology that map to new OBA trait terms to be created.
    For example,
    Consistency of Stool
  3. Terminology that are not in scope for OBA.
    • Information artefact codes
      For example,
      Observation interpretation,
      Referral lab test method
    • Features of abnormal or other phenotypes covered by HP
      For example,
      Bacteria identified in Blood by Culture skos:relatedMatch HP:0031864 Bacteremia
    • Other abnormal physiology, symptom, pathology related measurements
      For example,
      Pain severity Wong-Baker FACES pain rating scale,
      Acanthamoeba sp identified in Specimen by Organism specific culture
    • Genotype related terminology
      For example,
      COL3A1 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method

Tasks

  • indicate which of the targeted terms you are curating in the linked gsheet table
    Table headings:

  • for any new OBA term, link the related OBA ticket

@rays22
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rays22 commented Nov 1, 2023

Hi @ar-ibrahim ,
If you would like to get involved in the LOINC-OBA mapping project, please pick some terms to curate from the linked gsheet table and add your name to the rows you are curating to avoid any duplication of effort.

@rays22 rays22 added the Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits label Nov 1, 2023
@rays22 rays22 changed the title Track LOINC-OBA mapping Track clinical measurement mappings Nov 17, 2023
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Labels
Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits
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