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covarSearchAuto
At least from nlmixr2
nlmixr2
> rxode2::.rxWithWd(tempdir(), {# with temporary directory + > + > auto1 <- covarSearchAuto(fit, varsVec = c("ka", "cl"), + > covarsVec = c("WT")) + > + > }) ── starting forward search... ───────────────────────────────────────────────────────────────────────────────────────────────────────── Key: U: Unscaled Parameters; X: Back-transformed parameters; G: Gill difference gradient approximation F: Forward difference gradient approximation C: Central difference gradient approximation M: Mixed forward and central difference gradient approximation Unscaled parameters for Omegas=chol(solve(omega)); Diagonals are transformed, as specified by foceiControl(diagXform=) |-----+---------------+-----------+-----------+-----------+-----------| | #| Objective Fun | tka | tcl | tv | add.sd | |.....................| cov_WT_ka | o1 | o2 | o3 | | 1| 116.80360 | -0.7319 | -0.4146 | 1.000 | -0.5984 | |.....................| -1.000 | -0.2735 | 0.1279 | 0.5549 | | U| 116.8036 | 0.4638 | 1.013 | 3.459 | 0.6946 | |.....................| 0.000 | 1.257 | 1.951 | 2.689 | | X| 116.8036 | 1.590 | 2.753 | 31.79 | 0.6946 | |.....................| 0.000 | 1.257 | 1.951 | 2.689 | | G| Gill Diff. | 0.02023 | 0.1352 | -0.3409 | 0.06867 | |.....................| -0.001704 | 0.1258 | 0.1391 | -0.01370 | | 2| 179.09946 | -0.7521 | -0.5497 | 1.341 | -0.6671 | |.....................| -0.9983 | -0.3994 | -0.01121 | 0.5686 | ... ── forward search complete ── Error in inherits(fit, "nlmixr2FitCore") : object 'fit' not found ℹ Loading nlmixr2 > traceback() 12: backwardSearch(varsVec, covarsVec, catvarsVec, fitorig = fit, fitupdated = resFwd[[1]], pVal = pVal$bck, reFitCovars = FALSE, outputDir = outputDir, restart = restart) 11: nlmixr2extra::covarSearchAuto(fit = fit, varsVec = varsVec, covarsVec = covarsVec, pVal = pVal, catvarsVec = catvarsVec, searchType = searchType, restart = restart) at hardReexports.R#274 10: covarSearchAuto(fit, varsVec = c("ka", "cl"), covarsVec = c("WT")) at file39e0e80c04c.R#34 9: force(code) 8: rxode2::.rxWithWd(tempdir(), { auto1 <- covarSearchAuto(fit, varsVec = c("ka", "cl"), covarsVec = c("WT")) }) at file39e0e80c04c.R#32 7: eval(ei, envir) 6: eval(ei, envir) 5: withVisible(eval(ei, envir)) 4: source(tmp, echo = !quiet, local = env, max.deparse.length = Inf) 3: FUN(X[[i]], ...) 2: lapply(files, pkgload::run_example, run_donttest = run_donttest, run_dontrun = run_dontrun)
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Hmm. I can't reproduce this in my environment. Should I pull all the recent changes?
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At least from
nlmixr2
The text was updated successfully, but these errors were encountered: