Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adapt init_bold_reference_wf to use the new init_epi_reference_wf #615

Open
oesteban opened this issue Feb 5, 2021 · 0 comments
Open

Adapt init_bold_reference_wf to use the new init_epi_reference_wf #615

oesteban opened this issue Feb 5, 2021 · 0 comments
Assignees
@oesteban
Labels
effort:medium Estimated medium effort task impact:high Estimated high impact task workflows
Milestone
1.4.0

Comments

@oesteban
Copy link
Member

oesteban commented Feb 5, 2021 •
edited
Loading

The idea is to avoid most of the massaging happening inside the old pipeline, since the references generated with the new workflow (#610) are ready for masking/registration.

In particular, the N4 and 3dUnifize steps are not necessary anymore. In addition, we could consider dropping FSL BET completely, and use the new masking we are testing in SDCFlows (which would require upstreaming interfaces here).
@oesteban oesteban added effort:medium Estimated medium effort task impact:high Estimated high impact task workflows labels Feb 5, 2021
@oesteban oesteban added this to the 1.4.0 milestone Feb 5, 2021
@oesteban oesteban self-assigned this Feb 5, 2021
This was referenced Feb 5, 2021
Merged
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@oesteban oesteban

Labels
effort:medium Estimated medium effort task impact:high Estimated high impact task workflows
Projects
None yet
Milestone
1.4.0
Development

No branches or pull requests
1 participant
@oesteban