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mixcr exportQc chainUsage *.clns chainUsage.pdf (and likely similar plotting commands)
Expected Result
plot is generated
Actual Result
MoTTY X11 proxy: unable to connect to forwarded X server: Network error: Connection refused
java.awt.AWTError: Can't connect to X11 window server using 'localhost:10.0' as the value of the DISPLAY variable.
at sun.awt.X11GraphicsEnvironment.initDisplay(Native Method)
at sun.awt.X11GraphicsEnvironment.access$200(X11GraphicsEnvironment.java:65)
at sun.awt.X11GraphicsEnvironment$1.run(X11GraphicsEnvironment.java:115)
at java.security.AccessController.doPrivileged(Native Method)
at sun.awt.X11GraphicsEnvironment.<clinit>(X11GraphicsEnvironment.java:74)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at java.awt.GraphicsEnvironment.createGE(GraphicsEnvironment.java:103)
at java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment(GraphicsEnvironment.java:82)
at java.awt.image.BufferedImage.createGraphics(BufferedImage.java:1181)
at org.apache.fop.svg.PDFGraphics2D.<init>(PDFGraphics2D.java:1724)
at org.apache.fop.svg.PDFDocumentGraphics2D.<init>(PDFDocumentGraphics2D.java:100)
at org.apache.fop.svg.PDFTranscoder.transcode(PDFTranscoder.java:112)
at org.apache.batik.transcoder.XMLAbstractTranscoder.transcode(XMLAbstractTranscoder.java:142)
at org.apache.batik.transcoder.SVGAbstractTranscoder.transcode(SVGAbstractTranscoder.java:158)
at com.milaboratory.miplots.ExportKt.toBytes(Export.kt:165)
at com.milaboratory.miplots.ExportKt.toPDF(Export.kt:56)
at com.milaboratory.miplots.ExportKt.toPDF(Export.kt:54)
at com.milaboratory.miplots.ExportKt.writePDFFigure(Export.kt:198)
at com.milaboratory.miplots.ExportKt.writeFile(Export.kt:179)
at com.milaboratory.miplots.ExportKt.writeFile(Export.kt:171)
at com.milaboratory.mixcr.cli.qc.CommandExportQcChainUsage.run1(CommandExportQcChainUsage.kt:139)
at com.milaboratory.mixcr.cli.MiXCRCommandWithOutputs.run0(MiXCRCommandWithOutputs.kt:69)
at com.milaboratory.mixcr.cli.MiXCRCommand.run(MiXCRCommand.kt:36)
at picocli.CommandLine.executeUserObject(CommandLine.java:1939)
at picocli.CommandLine.access$1300(CommandLine.java:145)
at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358)
at picocli.CommandLine$RunLast.handle(CommandLine.java:2352)
at picocli.CommandLine$RunLast.handle(CommandLine.java:2314)
at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
at picocli.CommandLine$RunLast.execute(CommandLine.java:2316)
at com.milaboratory.mixcr.cli.Main.registerLogger$lambda-25(Main.kt:387)
at picocli.CommandLine.execute(CommandLine.java:2078)
at com.milaboratory.mixcr.cli.Main.main(Main.kt:87)
Command
mixcr exportQc chainUsage *.clns chainUsage.pdf
(and likely similar plotting commands)Expected Result
plot is generated
Actual Result
Workaround
Disabling X11 forwarding solves the issue.
Env
ssh connection to server with MiXCR v4.2.0
Duplicate
milaboratory/docs#56 (comment)
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