To run a given script using the run script:
./run.sh scripts/directory/script_name.py <arguments>
To run a giving script using Docker:
docker run --rm -it -v "$HOME"/.config:/.config broadinstitute/firecloud-tools python /scripts/<script name.py> <arguments>
- Install the Google Cloud SDK from https://cloud.google.com/sdk/downloads
- Set the Application Default Credentials (run
gcloud auth application-default login) - Python 2.7
When running without the run script or docker, check the packages that are pip installed in either run.sh or the Dockerfile.