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OZ_VPX361_amphibians.htm
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<!DOCTYPE html>
<head>
<title>OneZoom Tree of Life Explorer</title>
<META NAME="robots" CONTENT="index,follow" />
<META NAME="description" CONTENT="OneZoom Tree of Life Explorer" />
<META NAME="keywords" CONTENT="OneZoom,tree,life,phylogeny,phylogenetics,phylogenetic,viewer,explorer,Rosindell,Harmon,mammal,mammals,red,list,redlist,IUCN,one,zoom,fractal,L-system,evolution,ecology,biodiversity,biology,science" />
<meta name="author" content="James Rosindell">
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<FONT COLOR="FFFFFF" id = "viewtxt2"> </FONT>
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<input id = "latincheckbox" type="checkbox" name="latinsearch" value="latinsearch" checked="checked" />
<FONT COLOR="FFFFFF" id = "latintxt"> Latin </FONT>
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<FONT COLOR="FFFFFF" id = "traittxt"> Conservation </FONT>
<button style = "cursor:pointer"id = "searchbutton" type="button" id= "markbutton" onclick="marksearch();">Mark Results</button>
<button style = "cursor:pointer"id = "searchbutton2" type="button" id= "markbutton" onclick="unmarksearch();">Unmark Results</button>
<button style = "cursor:pointer"id = "leapbutton" name="Flybutton" type="button" onclick="performleap();">Show Results</button>
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<FONT COLOR="FFFFFF" id = "datatxt"> Data in newick format, ultrametric, polytomies as branch length zero - </FONT>
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Copyright (c) 2012 owned by James Rosindell and Imperial College, London
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Citation: "OneZoom: A Fractal Explorer for the Tree of Life" PLoS Biology (2012) Rosindell, J. and Harmon, L. J.
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Notes:
Conceptualised and written by James Rosindell with advisory input at all stages of development from Luke Harmon
Please edit to include your own data by opening in a text editor and following the instructions
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Treefrogs}:13.25920578)ARTHROLEPTIDAE{Forest Treefrogs* Night Frogs and more}:18.3)1004792:14.2,(((((Breviceps_macrops{Desert Rain Frog_VU_D}:43.71719479,(Breviceps_verrucosus{Plaintive Rain Frog_LC_S}:43.71719479,Breviceps_fuscus{Black Rain Frog_LC_S}:43.71719479)1004793:0)1004794:0,(Breviceps_fichus{_LC_U}:43.71719479,(Breviceps_sylvestris{Forest Rain Frog_VU_D}:43.71719479,Breviceps_mossambicus{Mozambique Rain Frog_LC_S}:43.71719479)1004795:0)1004796:0)1004797:0,((((Breviceps_gibbosus{Giant Rain Frog_VU_D}:43.71719479,Breviceps_namaquensis{Namaqua Rain Frog_LC_S}:43.71719479)1004798:0,Breviceps_poweri{Power's Rain Frog_LC_S}:43.71719479)1004799:0,Breviceps_montanus{Mountain Rain Frog_LC_S}:43.71719479)1004800:0,((Breviceps_acutirostris{Common Rain Frog_LC_S}:43.71719479,Breviceps_sopranus{Whistling Rain Frog_DD_D}:43.71719479)1004801:0,(Breviceps_rosei{Rose's Rain Frog_LC_S}:43.71719479,(Breviceps_adspersus{Common Rain 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Salamander_VU_D}:123.553273,Ambystoma_dumerilii{_CR_D}:123.553273)1005488:0)1005489:0)1005490:0)1005491:0,(((Ambystoma_jeffersonianum{Jefferson Salamander_LC_S}:123.553273,Ambystoma_talpoideum{Mole Salamander_LC_S}:123.553273)1005492:0,(Ambystoma_granulosum{Granular Salamander_CR_D}:123.553273,Ambystoma_californiense{California Tiger Salamander_VU_D}:123.553273)1005493:0)1005494:0,(Ambystoma_lermaense{Lake Lerma Salamander_CR_D}:123.553273,Ambystoma_rosaceum{Tarahumara Salamander_LC_U}:123.553273)1005495:0)1005496:0)1005497:4.546727001,(((Dicamptodon_ensatus{California Giant Salamander_NT_U}:50.35909018,Dicamptodon_tenebrosus{Pacific Giant Salamander_LC_S}:50.35909018)1005498:0,Dicamptodon_copei{Cope's Giant Salamander_LC_S}:50.35909018)1005499:0,Dicamptodon_aterrimus{Idaho Giant Salamander_LC_S}:50.35909018){Pacific Giant Salamanders}:77.74090982)AMBYSTOMATIDAE{Mole Salamanders}:61)1005502:17,(((((Necturus_beyeri{Gulf Coast Waterdog_LC_U}:17.5,Necturus_punctatus{Dwarf Waterdog_LC_U}:17.5)1005503:0,Necturus_alabamensis{Alabama Waterdog_EN_D}:17.5)1005504:107.8949185,(Necturus_lewisi{Neuse River Waterdog_NT_D}:54.00465189,Necturus_maculosus{Mudpuppy_LC_S}:54.00465189)1005505:71.39026659){Waterdogs}:14.20508152,Proteus_anguinus{Olm_VU_D}:139.6)PROTEIDAE:52.3,((Pseudobranchus_axanthus{Narrow-striped Dwarf Siren_LC_D}:57.76765617,Pseudobranchus_striatus{Dwarf Siren_LC_D}:57.76765617){Dwarf Sirens}:57.76765617,(Siren_lacertina{Greater Siren_LC_U}:1.6,Siren_intermedia{Lesser Siren_LC_U}:1.6)1005509:113.9353123)SIRENIDAE{Sirens}:76.36468766)1005511:14.2)1005512:5.2)1005513:35.1,((((((((((Hynobius_nigrescens{Japanese Black Salamander_LC_S}:32.28139428,(Hynobius_tokyoensis{Tokyo Salamander_VU_D}:32.28139428,(Hynobius_abei{Abe's Salamander_CR_D}:32.28139428,(Hynobius_chinensis{_EN_D}:32.28139428,Hynobius_amjiensis{_CR_D}:32.28139428)1005514:0)1005515:0)1005516:0)1005517:0,Hynobius_formosanus{_EN_D}:32.28139428)1005518:0,(Hynobius_katoi{_DD_U}:32.28139428,Hynobius_hidamontanus{Hakuba Salamander_EN_D}:32.28139428)1005519:0)1005520:0,((((Hynobius_retardatus{Ezo Salamander_LC_S}:32.28139428,(Hynobius_naevius{Blotched Salamander_LC_S}:32.28139428,(Hynobius_boulengeri{Odaigahara Salamander_VU_D}:32.28139428,Hynobius_yiwuensis{_VU_D}:32.28139428)1005521:0)1005522:0)1005523:0,((((Hynobius_okiensis{Oki Salamander_CR_D}:32.28139428,((Hynobius_dunni{Oita Salamander_EN_D}:32.28139428,Hynobius_turkestanicus{Turkestanian Salamander_DD_U}:32.28139428)1005524:0,(Hynobius_lichenatus{Tohoku Salamander_LC_S}:32.28139428,Hynobius_yunanicus{_NE_U}:32.28139428)1005525:0)1005526:0)1005527:0,Hynobius_kimurae{Hida Salamander_LC_S}:32.28139428)1005528:0,Hynobius_nebulosus{Clouded Salamander_LC_D}:32.28139428)1005529:0,(((Hynobius_quelpaertensis{_DD_U}:32.28139428,Hynobius_leechii{_LC_D}:32.28139428)1005530:0,(Hynobius_takedai{Hokuriku Salamander_EN_D}:32.28139428,Hynobius_tsuensis{Tsushima Salamander_LC_S}:32.28139428)1005531:0)1005532:0,Hynobius_stejnegeri{Amber-coloured Salamander_VU_D}:32.28139428)1005533:0)1005534:0)1005535:0,Hynobius_guabangshanensis{_DD_U}:32.28139428)1005536:0,(Hynobius_sonani{_EN_D}:32.28139428,Hynobius_arisanensis{_VU_D}:32.28139428)1005537:0)1005538:0)1005539:3.347296648,((((((Batrachuperus_cochranae{_NE_U}:19.05940594,Batrachuperus_taibaiensis{_DD_U}:19.05940594)1005540:0,Batrachuperus_tibetanus{Alpine Stream Salamander_VU_D}:19.05940594)1005541:0,((Batrachuperus_pinchonii{Stream Salamander_VU_D}:19.05940594,Batrachuperus_yenyuanensis{Yenyuan Stream Salamander_VU_D}:19.05940594)1005542:0,Batrachuperus_londongensis{Longdong Stream Salamander_EN_D}:19.05940594)1005543:0)1005544:0,Batrachuperus_karlschmidti{_VU_D}:19.05940594)1005545:3.493487379,((Liua_shihi{Wushan Salamander_NT_D}:6.789097379,Liua_tsinpaensis{Tsinpa Salamander_VU_D}:6.789097379)1005546:3.971367381,Pseudohynobius_flavomaculatus{Yellow-spotted Salamander_VU_D}:10.76046476)1005547:11.79242856)1005548:0.9335248127,Salamandrella_keyserlingii{Siberian Newt_LC_S}:23.48641814)1005549:12.14227279)1005550:0.2544194243,Pachyhynobius_shangchengensis{Shancheng Stout Salamander_VU_D}:35.88311035)1005551:0.9563294729,(((Paradactylodon_persicus{Persian Mountain Salamander_NT_U}:10.76046476,Paradactylodon_mustersi{_CR_D}:10.76046476)1005552:0,Paradactylodon_gorganensis{_CR_D}:10.76046476){Mountain Salamanders}:2.817729999,Ranodon_sibiricus{Semirechensk Salamander_EN_D}:13.57819476)1005554:23.26124507)1005555:0.4452856383,(Onychodactylus_fischeri{Fischer's Clawed Salamander_LC_D}:6.789097379,Onychodactylus_japonicus{Japanese Clawed Salamander_LC_S}:6.789097379){Clawed Salamanders}:30.49562808)1005557:0.2152745365,Protohynobius_puxiongensis{_DD_U}:37.5)HYNOBIIDAE{Asiatic Salamanders}:136.6,((Andrias_japonicus{Japanese Giant Salamander_NT_D}:31.00783564,Andrias_davidianus{Chinese Giant Salamander_CR_D}:31.00783564)1005559:18.13842108,Cryptobranchus_alleganiensis{Hellbender_NT_D}:49.14625671)CRYPTOBRANCHIDAE{Giant Salamanders}:124.9537433)1005561:72.3)Caudata{Salamanders and Newts}:112)1005563:12.59999979,((((((((((Caecilia_disossea{_LC_U}:57.57664441,Caecilia_marcusi{_LC_U}:57.57664441)1005564:0,(Caecilia_corpulenta{_DD_U}:57.57664441,Caecilia_armata{_DD_U}:57.57664441)1005565:0)1005566:0,((Caecilia_mertensi{_DD_U}:57.57664441,Caecilia_volcani{_DD_U}:57.57664441)1005567:0,(((Caecilia_subdermalis{_LC_U}:57.57664441,Caecilia_subterminalis{_DD_U}:57.57664441)1005568:0,Caecilia_tentaculata{_LC_U}:57.57664441)1005569:0,(Caecilia_inca{_DD_U}:57.57664441,Caecilia_nigricans{_LC_U}:57.57664441)1005570:0)1005571:0)1005572:0)1005573:0,(((Caecilia_occidentalis{_DD_U}:57.57664441,Caecilia_antioquiaensis{_DD_U}:57.57664441)1005574:0,(((Caecilia_gracilis{_LC_U}:57.57664441,((Caecilia_degenerata{_DD_U}:57.57664441,Caecilia_flavopunctata{_DD_U}:57.57664441)1005575:0,Caecilia_orientalis{_LC_U}:57.57664441)1005576:0)1005577:0,(Caecilia_crassisquama{_DD_U}:57.57664441,Caecilia_tenuissima{_DD_U}:57.57664441)1005578:0)1005579:0,((Caecilia_leucocephala{_LC_U}:57.57664441,Caecilia_bokermanni{_DD_U}:57.57664441)1005580:0,(Caecilia_abitaguae{_DD_U}:57.57664441,Caecilia_dunni{_DD_U}:57.57664441)1005581:0)1005582:0)1005583:0)1005584:0,((((Caecilia_caribea{_DD_U}:57.57664441,Caecilia_albiventris{_DD_U}:57.57664441)1005585:0,Caecilia_pressula{_DD_U}:57.57664441)1005586:0,Caecilia_subnigricans{_LC_U}:57.57664441)1005587:0,((Caecilia_attenuata{_DD_U}:57.57664441,Caecilia_isthmica{_DD_U}:57.57664441)1005588:0,(Caecilia_guntheri{_DD_U}:57.57664441,Caecilia_thompsoni{_DD_U}:57.57664441)1005589:0)1005590:0)1005591:0)1005592:0)1005593:0,(Caecilia_pachynema{_DD_U}:57.57664441,Caecilia_perdita{_LC_U}:57.57664441)1005594:0)1005595:5.823355588,(((Atretochoana_eiselti{_DD_U}:50.6,((Typhlonectes_cunhai{_DD_U}:21.06425699,Typhlonectes_natans{Rubber Eel_LC_S}:21.06425699)1005596:0,Typhlonectes_compressicauda{_LC_U}:21.06425699)1005597:29.53574301)1005598:0,((Chthonerpeton_viviparum{_DD_U}:39.87019942,Chthonerpeton_exile{_DD_U}:39.87019942)1005599:0,((Chthonerpeton_braestrupi{_DD_U}:39.87019942,(Chthonerpeton_perissodus{_DD_U}:39.87019942,Chthonerpeton_onorei{_DD_U}:39.87019942)1005600:0)1005601:0,(Chthonerpeton_noctinectes{_DD_U}:39.87019942,(Chthonerpeton_arii{_DD_U}:39.87019942,Chthonerpeton_indistinctum{_LC_U}:39.87019942)1005602:0)1005603:0)1005604:0)1005605:10.72980058)1005606:0,(Nectocaecilia_petersii{_LC_U}:50.6,Potomotyphlus_kaupii{_LC_U}:50.6)1005607:0)1005608:12.8)1005609:85.8,(((((((Siphonops_paulensis{_LC_U}:47.06800665,((Siphonops_leucoderus{_DD_U}:47.06800665,(Siphonops_annulatus{_LC_U}:47.06800665,Siphonops_insulanus{_DD_U}:47.06800665)1005610:0)1005611:0,Siphonops_hardyi{_LC_S}:47.06800665)1005612:0)1005613:5.331993351,Luetkenotyphlus_brasiliensis{_DD_U}:52.4)1005614:41.1,((Microcaecilia_taylori{_LC_U}:62.75605383,((Microcaecilia_supernumeraria{_DD_U}:62.75605383,Microcaecilia_unicolor{_LC_U}:62.75605383)1005615:0,Microcaecilia_albiceps{_LC_U}:62.75605383)1005616:0)1005617:0,Microcaecilia_rabei{_DD_U}:62.75605383)1005618:30.74394617)1005619:9.3,(Hypogeophis_rostratus{_LC_U}:51.6,Praslinia_cooperi{_VU_U}:51.6)1005620:51.2)1005621:7.4,((Gegeneophis_madhavaorum{_NE_U}:75.26778422,Gegeneophis_danieli{_DD_U}:75.26778422)1005622:0,((((Gegeneophis_ramaswamii{_LC_S}:75.26778422,Gegeneophis_krishni{_DD_U}:75.26778422)1005623:0,(Gegeneophis_seshachari{_DD_U}:75.26778422,Gegeneophis_fulleri{_DD_U}:75.26778422)1005624:0)1005625:0,Gegeneophis_nadkarnii{_DD_U}:75.26778422)1005626:0,Gegeneophis_carnosus{_DD_U}:75.26778422)1005627:0)1005628:34.93221578)1005629:11,((((((Dermophis_gracilior{_DD_U}:80.23734184,Dermophis_occidentalis{_DD_U}:80.23734184)1005630:0,Dermophis_glandulosus{_DD_U}:80.23734184)1005631:0,Dermophis_parviceps{_LC_U}:80.23734184)1005632:0,(Dermophis_costaricensis{_DD_U}:80.23734184,(Dermophis_oaxacae{_DD_U}:80.23734184,Dermophis_mexicanus{_VU_D}:80.23734184)1005633:0)1005634:0)1005635:10.36265816,(Schistometopum_gregorii{_LC_U}:28.58111784,Schistometopum_thomense{_LC_U}:28.58111784)1005636:62.01888216)1005637:11.9,((Geotrypetes_pseudoangeli{_DD_U}:45.31669614,Geotrypetes_seraphini{_LC_U}:45.31669614)1005638:0,Geotrypetes_angeli{_DD_U}:45.31669614)1005639:57.18330386)1005640:18.7)1005641:24.9,(((Scolecomorphus_vittatus{_LC_U}:14.89947678,Scolecomorphus_kirkii{_LC_U}:14.89947678)1005642:0,Scolecomorphus_uluguruensis{_LC_U}:14.89947678)1005643:9.400523216,((Crotaphatrema_bornmuelleri{_DD_U}:14.89947678,Crotaphatrema_tchabalmbaboensis{_DD_U}:14.89947678)1005644:0,Crotaphatrema_lamottei{_DD_U}:14.89947678)1005645:9.400523216)1005646:121.8)1005647:3.1)1005648:8,((((Boulengerula_changamwensis{_DD_U}:87.67656558,Boulengerula_fischeri{_DD_U}:87.67656558)1005649:0,(Boulengerula_niedeni{_CR_D}:87.67656558,(Boulengerula_denhardti{_DD_U}:87.67656558,Boulengerula_boulengeri{_LC_U}:87.67656558)1005650:0)1005651:0)1005652:0,(Boulengerula_taitana{_LC_S}:87.67656558,Boulengerula_uluguruensis{_LC_U}:87.67656558)1005653:0)1005654:11.32343442,(Herpele_multiplicata{_DD_U}:31.2310228,Herpele_squalostoma{_LC_D}:31.2310228)1005655:67.7689772)1005656:58.2)CAECILIIDAE{Common Caecilians}:33.6,((((((Ichthyophis_pseudangularis{_VU_U}:34.74804773,Ichthyophis_supachaii{_DD_U}:34.74804773)1005658:0,((Ichthyophis_glutinosus{_LC_U}:34.74804773,Ichthyophis_laosensis{_DD_U}:34.74804773)1005659:0,((Ichthyophis_sikkimensis{_DD_U}:34.74804773,Ichthyophis_paucisulcus{_DD_U}:34.74804773)1005660:0,Ichthyophis_biangularis{_DD_U}:34.74804773)1005661:0)1005662:0)1005663:0,(Ichthyophis_glandulosus{_DD_U}:34.74804773,(Ichthyophis_sumatranus{_DD_U}:34.74804773,Ichthyophis_hypocyaneus{Javan Caecilian_DD_U}:34.74804773)1005664:0)1005665:0)1005666:0,((((((Ichthyophis_bannanicus{_LC_U}:34.74804773,Ichthyophis_billitonensis{_DD_U}:34.74804773)1005667:0,Ichthyophis_subterrestris{_NE_U}:34.74804773)1005668:0,((Ichthyophis_elongatus{_DD_U}:34.74804773,Ichthyophis_atricollaris{_DD_U}:34.74804773)1005669:0,(Ichthyophis_acuminatus{_DD_U}:34.74804773,Ichthyophis_orthoplicatus{_VU_U}:34.74804773)1005670:0)1005671:0)1005672:0,Ichthyophis_bernisi{_DD_U}:34.74804773)1005673:0,(((Ichthyophis_bombayensis{_NE_U}:34.74804773,((Ichthyophis_kohtaoensis{Koa Tao Island Caecilian_LC_U}:34.74804773,Ichthyophis_javanicus{_DD_U}:34.74804773)1005674:0,Ichthyophis_husaini{_DD_U}:34.74804773)1005675:0)1005676:0,(Ichthyophis_peninsularis{_NE_U}:34.74804773,Ichthyophis_monochrous{_DD_U}:34.74804773)1005677:0)1005678:0,(((Ichthyophis_singaporensis{_DD_U}:34.74804773,Ichthyophis_beddomei{_LC_U}:34.74804773)1005679:0,Ichthyophis_mindanaoensis{_DD_U}:34.74804773)1005680:0,Ichthyophis_malabarensis{_NE_U}:34.74804773)1005681:0)1005682:0)1005683:0,((Ichthyophis_longicephalus{_DD_U}:34.74804773,Ichthyophis_dulitensis{_DD_U}:34.74804773)1005684:0,(Ichthyophis_youngorum{_DD_U}:34.74804773,(Ichthyophis_tricolor{_LC_U}:34.74804773,(Ichthyophis_humphreyi{_DD_U}:34.74804773,Ichthyophis_garoensis{_DD_U}:34.74804773)1005685:0)1005686:0)1005687:0)1005688:0)1005689:0)1005690:1.351952271,(((Caudacaecilia_nigroflava{_DD_U}:15.85907765,Caudacaecilia_larutensis{_DD_U}:15.85907765)1005691:0,Caudacaecilia_weberi{_DD_U}:15.85907765)1005692:0,(Caudacaecilia_paucidentula{_DD_U}:15.85907765,Caudacaecilia_asplenia{_DD_U}:15.85907765)1005693:0)1005694:20.24092235)1005695:37.5,(Uraeotyphlus_malabaricus{_DD_U}:39.6,((Uraeotyphlus_menoni{_DD_U}:39.6,(Uraeotyphlus_oxyurus{_DD_U}:39.6,Uraeotyphlus_interruptus{_DD_U}:39.6)1005696:0)1005697:0,Uraeotyphlus_narayani{_DD_U}:39.6)1005698:0){Indian Caecilians}:34)ICHTHYOPHIIDAE{Asiatic Tailed Caecilians}:117.2)1005701:29.9,(((((Epicrionops_peruvianus{_DD_U}:139.9717658,Epicrionops_petersi{_LC_U}:139.9717658)1005702:0,Epicrionops_niger{_LC_U}:139.9717658)1005703:0,(Epicrionops_columbianus{_DD_U}:139.9717658,(Epicrionops_lativittatus{_DD_U}:139.9717658,Epicrionops_parkeri{_DD_U}:139.9717658)1005704:0)1005705:0)1005706:0,(Epicrionops_marmoratus{_DD_U}:139.9717658,Epicrionops_bicolor{_LC_U}:139.9717658)1005707:0)1005708:7.92823417,Rhinatrema_bivittatum{_LC_U}:147.9)RHINATREMATIDAE{Neotropical Tailed Caecilians}:72.8)Gymnophiona{Caecilians}:150.3000002){Amphibians};"); }
// default viewing options (can be changed with buttons when running)
var polytype = 3; // the way polytomies are expressed (should be 0,1,2 or 3)
var viewtype = 2; // the default viewtype (should be 1,2,3,4 or 5)
var colourtype = 3; // the default colour mode - note: if doing further editing of colour palette's below this may become irrelevant
// colourtype = 3 is only suited for redlist data
var leaftype = 2; // leaf shape circular or natural - this cannpt be changed with buttons it is recommended you leave it
var fonttype = 'Helvetica'; // change the text font to match the rest of your article and journal style // 'sans-serif' // is good too
var intnodetextcolor = 'rgb(255,255,255)' // for interior node text colour where there is a name to be put
// note there are more advanced options later to change th interior node text
var backgroundcolor = 'rgb(255,255,200)' //background color 'null' if no background is wanted
var outlineboxcolor = 'rgb(0,0,0)' // outline box colour
// colour codes for redlist
function redlistcolor(codein)
{
switch(codein)
{
case "EX":
return ('rgb(0,0,180)');
case "EW":
return ('rgb(60,50,135)');
case "CR":
return ('rgb(220,0,0)');
case "EN":
return ('rgb(125,30,00)');
case "VU":
return ('rgb(85,85,30)');
case "NT":
return ('rgb(65,120,0)');
case "LC":
return ('rgb(0,220,0)');
case "DD":
return ('rgb(80,80,80)');
case "NE":
return ('rgb(0,0,0)');
default:
return ('rgb(0,0,0)');
}
}
// definition of geological periods
function gpmapper(datein)
{
if (datein > 253.8)
{
return("pre Triassic");
}
else
{
if (datein > 203.6)
{
return("Triassic");
}
else
{
if (datein > 150.8)
{
return("Jurassic");
}
else
{
if (datein > 70.6)
{
return("Cretaceous");
}
else
{
if (datein > 28.4)
{
return("Paleogene");
}
else
{
if (datein > 3.6)
{
return("Neogene");
}
else
{
return("Quaternary");
}
}
}
}
}
}
}
midnode.prototype.leafcolor1 = function()
{
// for the leaf fill
if ((this.redlist)&&(colourtype == 3))
{
return(redlistcolor(this.redlist));
}
else
{
if (colourtype == 3)
{
return (this.branchcolor());
}
else
{
return ('rgb(0,100,0)');
}
}
}
midnode.prototype.leafcolor2 = function()
{
// for the leaf outline
if ((this.redlist)&&(colourtype == 3))
{
return(redlistcolor(this.redlist));
}
else
{
if (colourtype == 3)
{
return (this.branchcolor());
}
else
{
return ('rgb(0,100,0)');
}
}
}
midnode.prototype.leafcolor3 = function()
{
return ('rgb(255,255,255)'); // for the leaf text
}
midnode.prototype.hitstextcolor = function()
{
// for text showing number of hits in each interior node (for search function)
if ((this.npolyt)||(polytype == 3))
{
return ('rgb(255,255,255)');
}
else
{
return this.branchcolor();
}
}
midnode.prototype.branchcolor = function() // branch colour logic
{
// this script sets the colours of the branches
var colortoreturn = 'rgb(100,75,50)';
if (colourtype == 2) // there are two different color schemes in this version described by the colourtype variable
{
// this.lengthbr is the date of the node
// timelim is the cut of date beyond which the tree is not drawn (when using growth animation functions
if ((this.lengthbr<150.8)&&(timelim<150.8))
{
colortoreturn = 'rgb(180,50,25)';
}
if ((this.lengthbr<70.6)&&(timelim<70.6))
{
colortoreturn = 'rgb(50,25,50)';
}
}
else
{
var conservation = (4*(this.num_CR) + 3*(this.num_EN) + 2*(this.num_VU) + this.num_NT);
var num_surveyed = (this.num_CR + this.num_EN + this.num_VU + this.num_NT + this.num_LC);
if (colourtype == 3)
{
if (num_surveyed == 0)
{
if (((this.num_NE >= this.num_DD)&&(this.num_NE >= this.num_EW))&&(this.num_NE >= this.num_EX))
{
colortoreturn = redlistcolor("NE");
}
else
{
if ((this.num_DD >= this.num_EX)&&(this.num_DD >= this.num_EW))
{
colortoreturn = redlistcolor("DD");
}
else
{
if (this.num_EW >= this.num_EX)
{
colortoreturn = redlistcolor("EW");
}
else
{
colortoreturn = redlistcolor("EX");
}
}
}
}
else
{
if ((conservation/num_surveyed)>3.5)
{
colortoreturn = redlistcolor("CR");
}
else
{
if ((conservation/num_surveyed)>2.5)
{
colortoreturn = redlistcolor("EN");
}
else
{
if ((conservation/num_surveyed)>1.5)
{
colortoreturn = redlistcolor("VU");
}
else
{
if ((conservation/num_surveyed)>0.5)
{
colortoreturn = redlistcolor("NT");
}
else
{
colortoreturn = redlistcolor("LC");
}
}
}
}
}
}
}
// the current logic uses different colorschemes for pre, post and during the Cretaceous period, if color type = 2
// otherwise it uses a fixed brown color for the branches
// when the tree is growing it only allows branches to be coloured for a certain period if the tree has already growed up to that period.
return colortoreturn;
}
midnode.prototype.barccolor = function() // branch outline colour logic
{
// this script sets the color for the outline of the branches
var colortoreturn = 'rgb(50,37,25)';
if (colourtype == 2)
{
if((this.lengthbr<70.6)&&(timelim<70.6))
{
colortoreturn = 'rgb(200,200,200)';
}
}
if (colourtype == 3)
{
colortoreturn = 'rgb(0,0,0)';
}
return colortoreturn;
}
midnode.prototype.highlightcolor = function() // highlight colour logic
{
// this logic defines the stripe colors that indicate search results, but could be edited to indicate other features such as traits
return 'rgb('+(Math.round(255-254*this.searchin/numhits)).toString()+','+(Math.round(255-254*this.searchin/numhits)).toString()+','+(Math.round(255-254*this.searchin/numhits)).toString()+')';
}
midnode.prototype.datetextcolor = function() // date text colour logic
{
var colortoreturn = 'rgb(255,120,100)';
if (colourtype == 2)
{
if ((this.lengthbr<150.8)&&(this.lengthbr>70.6))
{
colortoreturn = 'rgb(0,0,0)';
}
}
if (colourtype == 3)
{
colortoreturn = 'rgb(255,255,255)';
}
return colortoreturn;
}
midnode.prototype.richnesstextcolor = function() // richness text colour logic
{
var colortoreturn = 'rgb(200,200,255)';
if (colourtype == 2)
{
if ((this.lengthbr<150.8)&&(this.lengthbr>70.6))
{
colortoreturn = 'rgb(0,0,250)';
}
}
if (colourtype == 3)
{
colortoreturn = 'rgb(255,255,255)';
}
return colortoreturn;
}
// it is not advisable to edit below this point unless you are trying to sort out the display of custom trait data
// *** there are three types of leaves that are drawn by the code
// *** 1.) Fake leaf: where the tree continues but is smaller than the size threshold it is sometimes
// *** asthetically pleasing to draw a leaf there, especially if the threshold is a few pixels wide. If the threshold is much smaller it does not matter if the facke leaf is drawn or not.
// *** 2.) Growth leaf: where growing animations are taking place there should be leaves on the tips of the branches
// *** 3.) Tip leaf: these are the classic leaves in which species names are put - these are the tips of the complete tree.
// *** all leaf classes can be defined with custom logic in the three scripts below
midnode.prototype.fakeleaflogic = function(x,y,r,angle)
{
context.strokeStyle = this.leafcolor2();
context.fillStyle = this.leafcolor1();
if (leaftype == 1)
{
drawleaf1(x,y,r);
}
else
{
drawleaf2(x,y,r,angle);
}
}
midnode.prototype.growthleaflogic = function(x,y,r,angle)
{
context.strokeStyle = this.leafcolor2();
context.fillStyle = this.leafcolor1();
if (leaftype == 1)
{
drawleaf1(x,y,r);
}
else
{
drawleaf2(x,y,r,angle);
}
}
midnode.prototype.tipleaflogic = function(x,y,r,angle)
{
context.strokeStyle = this.leafcolor2();
context.fillStyle = this.leafcolor1();
if (leaftype == 1)
{
drawleaf1(x,y,r);
}
else
{
drawleaf2(x,y,r,angle);
}
}
// drawing the tree
midnode.prototype.draw = function()
{
var x ;
var y ;
var r ;
if(this.dvar)
{
if (this.rvar)
{
x = this.xvar;
y = this.yvar;
r = this.rvar;
}
if ((this.child1)&&(this.lengthbr > timelim))
{
if ((this.child1.richness_val) >= (this.child2.richness_val))
{
this.child1.draw ();
this.child2.draw ();
}
else
{
this.child2.draw ();
this.child1.draw ();
}
}
var ing = false; // if we are in the region where graphics need to be drawn
if((this.gvar)&&((polytype!=2)||(this.npolyt)))
{
ing = true;
context.lineCap = "round";
context.lineWidth = r*(this.bezr);
context.beginPath();
context.moveTo(x+r*(this.bezsx),y+r*this.bezsy);
context.bezierCurveTo(x+r*(this.bezc1x),y+r*(this.bezc1y),x+r*(this.bezc2x),y+r*(this.bezc2y),x+r*(this.bezex),y+r*(this.bezey));
context.strokeStyle = this.branchcolor();
context.stroke();
if ((highlight_search)&&(this.searchin > 0))
{
context.lineWidth = r*(this.bezr)/3;
context.strokeStyle = 'rgb(255,255,255)';
context.beginPath();
context.moveTo(x+r*(this.bezsx),y+r*this.bezsy);
context.bezierCurveTo(x+r*(this.bezc1x),y+r*(this.bezc1y),x+r*(this.bezc2x),y+r*(this.bezc2y),x+r*(this.bezex),y+r*(this.bezey));
context.stroke();
context.strokeStyle = this.highlightcolor();
context.lineWidth = r*(this.bezr)/5.0;
context.beginPath();
context.moveTo(x+r*(this.bezsx),y+r*this.bezsy);
context.bezierCurveTo(x+r*(this.bezc1x),y+r*(this.bezc1y),x+r*(this.bezc2x),y+r*(this.bezc2y),x+r*(this.bezex),y+r*(this.bezey));
context.stroke();
}
}
if (this.lengthbr > timelim)
{
if (((this.richness_val > 1)&&(r<=threshold))&&(timelim <= 0))
{
// we are drawing a fake leaf - ing is irrelevant as this is instead of drawing the children
this.fakeleaflogic(x+((r)*(this.nextx1)),y+(r)*(this.nexty1),r*leafmult*0.75*partc,this.arca);
}
else
{
if (ing)
{
if (this.richness_val > 1)
{
if (this.lengthbr > timelim)
{
// interior node drawing starts here
// first set up the variables that decide text size
var temp_twidth = (r*partc-r*partl2)*Twidth;
var temp_theight = (r*partc-r*partl2)*Tsize/2.0;
var temp_theight_2 = (r*partc-r*partl2)*Tsize/3.0;
// this piece of logic draws the arc background if needed (no text)
if ((highlight_search)&&(this.searchin > 0))
{
context.beginPath();
context.arc(x+r*(this.arcx),y+r*this.arcy,r*this.arcr*(1-partl2/2.0),0,Math.PI*2,true);
if ((this.npolyt)||(polytype == 3))
{
context.fillStyle = this.branchcolor();
}
else
{
context.fillStyle = this.highlightcolor();
}
context.fill();
}
if (((this.npolyt)||((highlight_search)&&(this.searchin > 0)))||(polytype == 3))
{
// we are drawing an internal circle
context.beginPath();
context.arc(x+r*(this.arcx),y+r*this.arcy,r*this.arcr*(1-partl2/2.0),0,Math.PI*2,true);
context.lineWidth = r*this.arcr*partl2;
context.strokeStyle = this.barccolor();
context.stroke();
}
// internal text drawing starts here *****
if ((this.npolyt)||(polytype == 3))
{
if (datahastraits)
{
// drawing internal text
if ( r > threshold*7)
{
// DRAW PIECHARTS
if (r > threshold*45)
{
context.fillStyle = 'rgb(255,255,255)';
context.beginPath();
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/3.3,0,Math.PI*2,true);
context.fill();
if (r > threshold*250)
{
for (i = 0 ; i < 9 ; i ++)
{
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*i*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.05,0,Math.PI*2,true);
context.fill();
}
context.fillStyle = redlistcolor("EX");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*0*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("EW");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*1*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("CR");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("EN");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("VU");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("NT");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*5*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("LC");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*6*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("DD");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*7*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = redlistcolor("NE");
context.beginPath();
context.arc(x+r*this.arcx+temp_theight*8*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,0,Math.PI*2,true);
context.fill();
context.fillStyle = this.leafcolor3();
autotext(false,"EX", x+r*this.arcx+temp_theight*0*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"EW", x+r*this.arcx+temp_theight*1*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"CR", x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"EN", x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"VU", x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"NT", x+r*this.arcx+temp_theight*5*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"LC", x+r*this.arcx+temp_theight*6*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"DD", x+r*this.arcx+temp_theight*7*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,"NE", x+r*this.arcx+temp_theight*8*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.09,temp_theight*0.04,temp_theight*0.04);
autotext(false,conconvert("EX"), x+r*this.arcx+temp_theight*0*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("EW"), x+r*this.arcx+temp_theight*1*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("CR"), x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("EN"), x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("VU"), x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("NT"), x+r*this.arcx+temp_theight*5*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("LC"), x+r*this.arcx+temp_theight*6*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("DD"), x+r*this.arcx+temp_theight*7*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,conconvert("NE"), x+r*this.arcx+temp_theight*8*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.12,temp_theight*0.04,temp_theight*0.005);
autotext(false,(Math.round(10000.0*(this.num_EX/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*0*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_EW/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*1*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_CR/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_EN/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_VU/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_NT/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*5*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_LC/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*6*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_DD/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*7*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(Math.round(10000.0*(this.num_NE/this.richness_val))/100.0).toString() + " %", x+r*this.arcx+temp_theight*8*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.045,temp_theight*0.04,temp_theight*0.008);
autotext(false,(this.num_EX).toString() + " species", x+r*this.arcx+temp_theight*0*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_EW).toString() + " species", x+r*this.arcx+temp_theight*1*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_CR).toString() + " species", x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_EN).toString() + " species", x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_VU).toString() + " species", x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_NT).toString() + " species", x+r*this.arcx+temp_theight*5*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_LC).toString() + " species", x+r*this.arcx+temp_theight*6*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_DD).toString() + " species", x+r*this.arcx+temp_theight*7*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(false,(this.num_NE).toString() + " species", x+r*this.arcx+temp_theight*8*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.06,temp_theight*0.04,temp_theight*0.005);
autotext(true,"Threatened", x+r*this.arcx+temp_theight*2*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.132,temp_theight_2*0.04,temp_theight*0.005);
autotext(true,"Threatened", x+r*this.arcx+temp_theight*3*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.132,temp_theight_2*0.04,temp_theight*0.005);
autotext(true,"Threatened", x+r*this.arcx+temp_theight*4*0.15-4*0.15*temp_theight,y+r*this.arcy+temp_theight_2*1.132,temp_theight_2*0.04,temp_theight*0.005);
}
var pieangle = 0;
var newpieangle = pieangle+(this.num_LC/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("LC")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle-0.1,newpieangle,false);
pieangle +=(this.num_LC/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_NT/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("NT")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_NT/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_VU/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("VU")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_VU/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_EN/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("EN")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_EN/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_CR/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("CR")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_CR/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_EW/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("EW")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_EW/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_EX/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("EX")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_EX/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_DD/this.richness_val)*Math.PI*2 +0.1;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("DD")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_DD/this.richness_val)*Math.PI*2;
context.fill();
newpieangle = pieangle+(this.num_NE/this.richness_val)*Math.PI*2;
if (newpieangle > Math.PI*2)
{
newpieangle = Math.PI*2;
}
context.fillStyle = redlistcolor("NE")
context.beginPath();
context.moveTo(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7);
context.arc(x+r*this.arcx,y+r*this.arcy+temp_theight_2*1.7,temp_theight/4,pieangle,newpieangle,false);
pieangle +=(this.num_NE/this.richness_val)*Math.PI*2;
context.fill();
context.fillStyle = intnodetextcolor;
autotext(false,"conservation status" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.9,temp_twidth*0.5,temp_theight_2/5.0);
}
// DO THE TEXT
if ((this.child1)&&(this.lengthbr))
{
context.fillStyle = this.datetextcolor();
if (this.lengthbr >10)
{
autotext(false,(Math.round((this.lengthbr)*10)/10.0).toString() + " Mya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
else
{
if (this.lengthbr >1)
{
autotext(false,(Math.round((this.lengthbr)*100)/100.0).toString() + " Mya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(Math.round((this.lengthbr)*10000)/10.0).toString() + " Kya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
}
}
var num_threatened = (this.num_CR + this.num_EN + this.num_VU);
if ((this.inlabel == true)&&((this.name2) != null))
{
context.fillStyle = intnodetextcolor;
autotext(true,this.name2 , x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.17,temp_twidth*1.35,temp_theight_2/1.5);
context.fillStyle = this.richnesstextcolor();
//*
if (num_threatened > 0)
{
autotext(false,(this.richness_val).toString() + " species , " + (num_threatened).toString() + " threatened ( " + (Math.round((num_threatened)/(this.richness_val)*1000.0)/10.0).toString() + "% )" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.5,temp_twidth*1.2,temp_theight_2/4.3);
}
else
{
autotext(false,(this.richness_val).toString() + " species, none threatened" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.5,temp_twidth,temp_theight_2/4.3);
}
if(this.phylogenetic_diversity>1000.0)
{
autotext(false,(Math.round(this.phylogenetic_diversity/100)/10.0).toString() + " billion years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.72,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(Math.round(this.phylogenetic_diversity)).toString() + " million years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.72,temp_twidth,temp_theight_2/5.0);
}
var linkpos = 0;
if ((this.npolyt)||(polytype != 2))
{
if ((highlight_search)&&(this.searchin > 0))
{
context.fillStyle = this.hitstextcolor();
if (this.searchin > 1)
{
autotext(false,(this.searchin).toString() + " hits" , x+r*this.arcx-temp_theight_2*0.3,y+r*this.arcy-temp_theight_2*1.95,temp_twidth*0.5,temp_theight_2*0.2);
}
else
{
autotext(false,"1 hit" , x+r*this.arcx-temp_theight_2*0.3,y+r*this.arcy-temp_theight_2*1.95,temp_theight_2*0.6,temp_theight_2*0.2);
}
linkpos = temp_theight_2*0.45;
}
}
if ( r > threshold*100)
{
if ((this.linkclick)&&((!this.child1.linkclick)&&(!this.child2.linkclick)))
{
context.fillStyle = 'rgb(0,0,0)';
context.beginPath();
context.arc(x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.12,0,Math.PI*2,true);
context.fill();
context.fillStyle = 'rgb(255,255,255)';
context.beginPath();
context.arc(x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.1,0,Math.PI*2,true);
context.fill();
context.fillStyle = intnodetextcolor;
context.fillStyle = 'rgb(0,0,0)';
autotext(true,"Wikipedia", x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.17,temp_theight_2/10.0);
}
else
{
context.fillStyle = 'rgb(255,255,255)';
context.beginPath();
context.arc(x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.12,0,Math.PI*2,true);
context.fill();
context.fillStyle = this.branchcolor();
context.beginPath();
context.arc(x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.1,0,Math.PI*2,true);
context.fill();
context.fillStyle = intnodetextcolor;
context.fillStyle = 'rgb(255,255,255)';
autotext(true,"Wikipedia", x+r*this.arcx+linkpos,y+r*this.arcy-temp_theight_2*1.95,temp_theight*0.17,temp_theight_2/10.0);
}
}
}
else
{
context.fillStyle = this.richnesstextcolor();
autotext(false,(this.richness_val).toString() + " species", x+r*this.arcx,y+r*this.arcy+temp_theight_2*-0.17,temp_twidth*1.35,temp_theight_2/1.5);
if (num_threatened > 0)
{
if (num_threatened > 1)
{
autotext(false,(num_threatened).toString() + " of " + (this.richness_val).toString() + " species are threatened ( " + (Math.round((num_threatened)/(this.richness_val)*1000.0)/10.0).toString() + "% )" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.45,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(num_threatened).toString() + " of " + (this.richness_val).toString() + " species is threatened ( " + (Math.round((num_threatened)/(this.richness_val)*1000.0)/10.0).toString() + "% )" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.45,temp_twidth,temp_theight_2/5.0);
}
}
else
{
autotext(false,"no threatened species" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.45,temp_twidth*0.75,temp_theight_2/5.0);
}
if(this.phylogenetic_diversity>1000.0)
{
autotext(false,(Math.round(this.phylogenetic_diversity/100)/10.0).toString() + " billion years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.65,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(Math.round(this.phylogenetic_diversity)).toString() + " million years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.65,temp_twidth,temp_theight_2/5.0);
}
if ((this.npolyt)||(polytype != 2))
{
if ((highlight_search)&&(this.searchin > 0))
{
context.fillStyle = this.hitstextcolor();
if (this.searchin > 1)
{
autotext(false,(this.searchin).toString() + " hits" , x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.85,temp_twidth*0.5,temp_theight_2*0.2);
}
else
{
autotext(false,"1 hit" , x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.85,temp_twidth*0.5,temp_theight_2*0.2);
}
}
}
}
}
}
else
{
if ((this.child1)&&(this.lengthbr))
{
context.fillStyle = this.datetextcolor();
if (this.lengthbr >10)
{
autotext(false,(Math.round((this.lengthbr)*10)/10.0).toString() + " Mya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
else
{
if (this.lengthbr >1)
{
autotext(false,(Math.round((this.lengthbr)*100)/100.0).toString() + " Mya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(Math.round((this.lengthbr)*10000)/10.0).toString() + " Kya", x+r*this.arcx,y+r*this.arcy-temp_theight_2*1.32,temp_twidth,temp_theight_2/1.5);
autotext(false,gpmapper(this.lengthbr) + " Period", x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.82,temp_twidth,temp_theight_2/5.0);
}
}
}
if ((this.inlabel == true)&&((this.name2) != null))
{
context.fillStyle = intnodetextcolor;
autotext(true,this.name2 , x+r*this.arcx,y+r*this.arcy-temp_theight_2*0.17,temp_twidth*1.35,temp_theight_2/1.5);
context.fillStyle = this.richnesstextcolor();
//*
autotext(false,(this.richness_val).toString() + " species" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.5,temp_twidth*1.2,temp_theight_2/4.3);
if(this.phylogenetic_diversity>1000.0)
{
autotext(false,(Math.round(this.phylogenetic_diversity/100)/10.0).toString() + " billion years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.72,temp_twidth,temp_theight_2/5.0);
}
else
{
autotext(false,(Math.round(this.phylogenetic_diversity)).toString() + " million years total phylogenetic diversity" , x+r*this.arcx,y+r*this.arcy+temp_theight_2*0.72,temp_twidth,temp_theight_2/5.0);