Generate both sheets with all candidates not just the ones marked accepted/reviewed

[evelyn-schmidt]

Just had to generate a 51mer sheet will all sequences colored. I had to comment out these lines to allow for all candidates despite their review status to be included in the final review files:

neoag_vaccine_scripts/scripts/generate_reviews_files.py

Lines 108 to 109 in 8c5d9a1

	reviewed_candidates = reviewed_candidates[reviewed_candidates.Evaluation != "Pending"]
	reviewed_candidates = reviewed_candidates[reviewed_candidates.Evaluation != "Reject"]

Also change these two lines to make sure that the sequences are colored despite the classI and classII alleles not passing our thresholds.

neoag_vaccine_scripts/scripts/color_peptides51mer.py

Line 85 in 8c5d9a1

if float(classI_ic50) < 1000 or float(classI_percentile) < 2:

neoag_vaccine_scripts/scripts/color_peptides51mer.py

Line 109 in 8c5d9a1

if float(classII_percentile) < 2:

These two things should probably be able to be turned on and off as the user wants them -- or the thresholds be able to be set in the run command