From 4d8130f88e2e1f00c57122832721ecc78a5b0102 Mon Sep 17 00:00:00 2001
From: bshifaw <bshifaw@broadinstitute.com>
Date: Tue, 30 Mar 2021 10:39:56 -0400
Subject: [PATCH] updated gatk docker to 4.2.0.0 (#60)

---
 haplotypecaller-gvcf-gatk4.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/haplotypecaller-gvcf-gatk4.wdl b/haplotypecaller-gvcf-gatk4.wdl
index 680d098..40e4463 100644
--- a/haplotypecaller-gvcf-gatk4.wdl
+++ b/haplotypecaller-gvcf-gatk4.wdl
@@ -39,7 +39,7 @@ workflow HaplotypeCallerGvcf_GATK4 {
   
     Boolean make_gvcf = true
     Boolean make_bamout = false
-    String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.1.9.0"
+    String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.2.0.0"
     String gatk_path = "/gatk/gatk"
     String gitc_docker = "us.gcr.io/broad-gotc-prod/genomes-in-the-cloud:2.4.7-1603303710"
     String samtools_path = "samtools"