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Non-zero distance for matching strings using default parameters #29

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johnmarkpittman opened this issue Feb 27, 2023 · 0 comments
Open

Non-zero distance for matching strings using default parameters #29

johnmarkpittman opened this issue Feb 27, 2023 · 0 comments

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@johnmarkpittman
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Using default parameters, affineGapDistance returns len(string_a) for matching strings, which produces normalizedAffineGapDistance of 0.5.

Is this intended behavior? I scanned through the referenced paper, but didn't see any discussion of this.
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@johnmarkpittman